Literature DB >> 19129665

Gene expression profile in the anterior regeneration of the earthworm using expressed sequence tags.

Sung-Jin Cho1, Myung Sik Lee, Eun Sik Tak, Eun Lee, Ki Seok Koh, Chi Hyun Ahn, Soon Cheol Park.   

Abstract

In order to gain insight into the gene expression profiles associated with anterior regeneration of the earthworm, Perionyx excavatus, we analyzed 1,159 expressed sequence tags (ESTs) derived from cDNA library early anterior regenerated tissue. Among the 1,159 ESTs analyzed, 622 (53.7%) ESTs showed significant similarity to known genes and represented 338 genes, of which 233 ESTs were singletons and 105 ESTs manifested as two or more ESTs. While 663 ESTs (57.2%) were sequenced only once, 308 ESTs (26.6%) appeared 2 to 5 times, and 188 ESTs (16.2%) were sequenced more than 5 times. A total of 803 genes were categorized into 15 groups according to their biological functions. Among 1,159 ESTs sequenced, we found several gene encoding signaling molecules, such as Notch and Distal-less. The ESTs used in this study should provide a resource for future research in earthworm regeneration.

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Year:  2009        PMID: 19129665     DOI: 10.1271/bbb.80391

Source DB:  PubMed          Journal:  Biosci Biotechnol Biochem        ISSN: 0916-8451            Impact factor:   2.043


  10 in total

1.  The transcriptome of anterior regeneration in earthworm Eudrilus eugeniae.

Authors:  Sayan Paul; Subburathinam Balakrishnan; Arun Arumugaperumal; Saranya Lathakumari; Sandhya Soman Syamala; Vaithilingaraja Arumugaswami; Sudhakar Sivasubramaniam
Journal:  Mol Biol Rep       Date:  2020-12-11       Impact factor: 2.316

2.  Identification, tissue specific expression analysis and functional characterization of arrestin gene (ARRDC) in the earthworm Eudrilus eugeniae: a molecular hypothesis behind worm photoreception.

Authors:  Sayan Paul; Sudalai Mani Dinesh Kumar; Sandhya Soman Syamala; Subburathinam Balakrishnan; Vijithkumar Vijayan; Vaithilingaraja Arumugaswami; Sivasubramaniam Sudhakar
Journal:  Mol Biol Rep       Date:  2022-02-24       Impact factor: 2.742

Review 3.  Comparative Aspects of Annelid Regeneration: Towards Understanding the Mechanisms of Regeneration.

Authors:  Roman P Kostyuchenko; Vitaly V Kozin
Journal:  Genes (Basel)       Date:  2021-07-28       Impact factor: 4.096

4.  Transcriptome characterization via 454 pyrosequencing of the annelid Pristina leidyi, an emerging model for studying the evolution of regeneration.

Authors:  Kevin G Nyberg; Matthew A Conte; Jamie L Kostyun; Alison Forde; Alexandra E Bely
Journal:  BMC Genomics       Date:  2012-06-29       Impact factor: 3.969

5.  Annotation of nerve cord transcriptome in earthworm Eisenia fetida.

Authors:  Vasanthakumar Ponesakki; Sayan Paul; Dinesh Kumar Sudalai Mani; Veeraragavan Rajendiran; Paulkumar Kanniah; Sudhakar Sivasubramaniam
Journal:  Genom Data       Date:  2017-10-12

6.  Large scale changes in the transcriptome of Eisenia fetida during regeneration.

Authors:  Aksheev Bhambri; Neeraj Dhaunta; Surendra Singh Patel; Mitali Hardikar; Abhishek Bhatt; Nagesh Srikakulam; Shruti Shridhar; Shamsudheen Vellarikkal; Rajesh Pandey; Rijith Jayarajan; Ankit Verma; Vikram Kumar; Pradeep Gautam; Yukti Khanna; Jameel Ahmed Khan; Bastian Fromm; Kevin J Peterson; Vinod Scaria; Sridhar Sivasubbu; Beena Pillai
Journal:  PLoS One       Date:  2018-09-27       Impact factor: 3.240

7.  Comparative transcriptomics in Syllidae (Annelida) indicates that posterior regeneration and regular growth are comparable, while anterior regeneration is a distinct process.

Authors:  Rannyele Passos Ribeiro; Guillermo Ponz-Segrelles; Christoph Bleidorn; Maria Teresa Aguado
Journal:  BMC Genomics       Date:  2019-11-14       Impact factor: 3.969

8.  Identification and Spatiotemporal Expression of Adenosine Deaminases Acting on RNA (ADAR) during Earthworm Regeneration: Its Possible Implication in Muscle Redifferentiation.

Authors:  Yoo Bin Yoon; Yun-Sang Yu; Beom Jun Park; Sung-Jin Cho; Soon Cheol Park
Journal:  Biology (Basel)       Date:  2020-12-05

Review 9.  Immunological properties of oxygen-transport proteins: hemoglobin, hemocyanin and hemerythrin.

Authors:  Christopher J Coates; Heinz Decker
Journal:  Cell Mol Life Sci       Date:  2016-08-12       Impact factor: 9.261

10.  Genome and single-cell RNA-sequencing of the earthworm Eisenia andrei identifies cellular mechanisms underlying regeneration.

Authors:  Yong Shao; Xiao-Bo Wang; Jin-Jin Zhang; Ming-Li Li; Shou-Song Wu; Xi-Yao Ma; Xue Wang; Hui-Fang Zhao; Yuan Li; Helen He Zhu; David M Irwin; De-Peng Wang; Guo-Jie Zhang; Jue Ruan; Dong-Dong Wu
Journal:  Nat Commun       Date:  2020-05-27       Impact factor: 14.919

  10 in total

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