Literature DB >> 19129297

Bayesian correction for attenuation of correlation in multi-trial spike count data.

Sam Behseta1, Tamara Berdyyeva, Carl R Olson, Robert E Kass.   

Abstract

When correlation is measured in the presence of noise, its value is decreased. In single-neuron recording experiments, for example, the correlation of selectivity indices in a pair of tasks may be assessed across neurons, but, because the number of trials is limited, the measured index values for each neuron will be noisy. This attenuates the correlation. A correction for such attenuation was proposed by Spearman more than 100 yr ago, and more recent work has shown how confidence intervals may be constructed to supplement the correction. In this paper, we propose an alternative Bayesian correction. A simulation study shows that this approach can be far superior to Spearman's, both in accuracy of the correction and in coverage of the resulting confidence intervals. We demonstrate the usefulness of this technology by applying it to a set of data obtained from the frontal cortex of a macaque monkey while performing serial order and variable reward saccade tasks. There the correction results in a substantial increase in the correlation across neurons in the two tasks.

Mesh:

Year:  2009        PMID: 19129297      PMCID: PMC2695642          DOI: 10.1152/jn.90727.2008

Source DB:  PubMed          Journal:  J Neurophysiol        ISSN: 0022-3077            Impact factor:   2.714


  6 in total

1.  Target selection for saccadic eye movements: direction-selective visual responses in the superior colliculus.

Authors:  G D Horwitz; W T Newsome
Journal:  J Neurophysiol       Date:  2001-11       Impact factor: 2.714

2.  Neuronal activity in macaque supplementary eye field during planning of saccades in response to pattern and spatial cues.

Authors:  C R Olson; S N Gettner; V Ventura; R Carta; R E Kass
Journal:  J Neurophysiol       Date:  2000-09       Impact factor: 2.714

3.  Impact of expected reward on neuronal activity in prefrontal cortex, frontal and supplementary eye fields and premotor cortex.

Authors:  Matthew R Roesch; Carl R Olson
Journal:  J Neurophysiol       Date:  2003-06-11       Impact factor: 2.714

4.  Color sensitivity of cells responsive to complex stimuli in the temporal cortex.

Authors:  Robin Edwards; Dengke Xiao; Christian Keysers; Peter Földiák; David Perrett
Journal:  J Neurophysiol       Date:  2003-08       Impact factor: 2.714

5.  The correction for attenuation due to measurement error: clarifying concepts and creating confidence sets.

Authors:  Eric P Charles
Journal:  Psychol Methods       Date:  2005-06

6.  Measurement error, instrumental variables and corrections for attenuation with applications to meta-analyses.

Authors:  R J Carroll; L A Stefanski
Journal:  Stat Med       Date:  1994-06-30       Impact factor: 2.373

  6 in total
  5 in total

1.  Adjusted regularization of cortical covariance.

Authors:  Giuseppe Vinci; Valérie Ventura; Matthew A Smith; Robert E Kass
Journal:  J Comput Neurosci       Date:  2018-09-06       Impact factor: 1.621

2.  ADJUSTED REGULARIZATION IN LATENT GRAPHICAL MODELS: APPLICATION TO MULTIPLE-NEURON SPIKE COUNT DATA.

Authors:  Giuseppe Vinci; Valérie Ventura; Matthew A Smith; Robert E Kass
Journal:  Ann Appl Stat       Date:  2018-07-28       Impact factor: 2.083

3.  Separating Spike Count Correlation from Firing Rate Correlation.

Authors:  Giuseppe Vinci; Valérie Ventura; Matthew A Smith; Robert E Kass
Journal:  Neural Comput       Date:  2016-03-04       Impact factor: 2.026

4.  Functional connectivity change as shared signal dynamics.

Authors:  Michael W Cole; Genevieve J Yang; John D Murray; Grega Repovš; Alan Anticevic
Journal:  J Neurosci Methods       Date:  2015-11-28       Impact factor: 2.390

5.  Accounting for experimental noise reveals that mRNA levels, amplified by post-transcriptional processes, largely determine steady-state protein levels in yeast.

Authors:  Gábor Csárdi; Alexander Franks; David S Choi; Edoardo M Airoldi; D Allan Drummond
Journal:  PLoS Genet       Date:  2015-05-07       Impact factor: 5.917

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.