Literature DB >> 19126575

The Flannotator--a gene and protein expression annotation tool for Drosophila melanogaster.

E Ryder1, H Spriggs, E Drummond, D St Johnston, S Russell.   

Abstract

SUMMARY: Understanding developmental processes and building towards integrative systems biology require detailed knowledge of the spatio-temporal expression of genes and proteins. We have developed a software package for collecting, storing and searching the annotation of protein or gene expression patterns in Drosophila melanogaster. Using standard Drosophila anatomy and Gene Ontologies, the system can readily capture expression patterns at any stage of development and in all recognized tissue types as well as details of sub-cellular localization. The web-based system allows multiple groups to work in collaboration and share images and annotation. AVAILABILITY: http://www.flannotator.org.uk/.

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Year:  2009        PMID: 19126575     DOI: 10.1093/bioinformatics/btp012

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  10 in total

1.  Conserved properties of Drosophila and human spermatozoal mRNA repertoires.

Authors:  Bettina E Fischer; Elizabeth Wasbrough; Lisa A Meadows; Owen Randlet; Steve Dorus; Timothy L Karr; Steven Russell
Journal:  Proc Biol Sci       Date:  2012-02-29       Impact factor: 5.349

2.  Co-transcriptional architecture in a Y loop in Drosophila melanogaster.

Authors:  Juliet L Redhouse; Julien Mozziconacci; Robert A H White
Journal:  Chromosoma       Date:  2011-05-10       Impact factor: 4.316

3.  BrainTrap: a database of 3D protein expression patterns in the Drosophila brain.

Authors:  Seymour Knowles-Barley; Mark Longair; J Douglas Armstrong
Journal:  Database (Oxford)       Date:  2010-07-06       Impact factor: 3.451

4.  Genome-wide analysis of the binding of the Hox protein Ultrabithorax and the Hox cofactor Homothorax in Drosophila.

Authors:  Siew Woh Choo; Robert White; Steven Russell
Journal:  PLoS One       Date:  2011-04-05       Impact factor: 3.240

5.  Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library.

Authors:  Nick Lowe; Johanna S Rees; John Roote; Ed Ryder; Irina M Armean; Glynnis Johnson; Emma Drummond; Helen Spriggs; Jenny Drummond; Jose P Magbanua; Huw Naylor; Bénédicte Sanson; Rebecca Bastock; Sven Huelsmann; Vitor Trovisco; Matthias Landgraf; Seymour Knowles-Barley; J Douglas Armstrong; Helen White-Cooper; Celia Hansen; Roger G Phillips; Kathryn S Lilley; Steven Russell; Daniel St Johnston
Journal:  Development       Date:  2014-10       Impact factor: 6.868

6.  Rapid clearance of epigenetic protein reporters from wound edge cells in Drosophila larvae does not depend on the JNK or PDGFR/VEGFR signaling pathways.

Authors:  Aimee E Anderson; Michael J Galko
Journal:  Regeneration (Oxf)       Date:  2014-04-01

7.  Characterisation of Drosophila Ubx CPTI000601 and hth CPTI000378 protein trap lines.

Authors:  Siew Woh Choo; Ching Yew Beh; Steven Russell; Robert White
Journal:  ScientificWorldJournal       Date:  2014-10-15

8.  Localized netrins act as positional cues to control layer-specific targeting of photoreceptor axons in Drosophila.

Authors:  Katarina Timofeev; Willy Joly; Dafni Hadjieconomou; Iris Salecker
Journal:  Neuron       Date:  2012-07-12       Impact factor: 17.173

9.  A Model of the Spatio-temporal Dynamics of Drosophila Eye Disc Development.

Authors:  Patrick Fried; Máximo Sánchez-Aragón; Daniel Aguilar-Hidalgo; Birgitta Lehtinen; Fernando Casares; Dagmar Iber
Journal:  PLoS Comput Biol       Date:  2016-09-14       Impact factor: 4.475

10.  Co-complex protein membership evaluation using Maximum Entropy on GO ontology and InterPro annotation.

Authors:  Irina M Armean; Kathryn S Lilley; Matthew W B Trotter; Nicholas C V Pilkington; Sean B Holden
Journal:  Bioinformatics       Date:  2018-06-01       Impact factor: 6.937

  10 in total

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