| Literature DB >> 19126242 |
Chin Leong Lim1, Padmanabhan Saravanan2, Ganapathy Rajaseger1, Lee Koon Wui1, Kai Tang3, Ponnampalam Gopalakrishnakone1,2, Yap Eric Pen-Huat1, Jia Lu1, Moochhala M Shabbir1.
Abstract
BACKGROUND: Heat stress (HS) and related illnesses are a major concern in military, sports, and fire brigadiers. HS results in physiologic responses of increased temperature, heart rate and sweating. In heat stroke, inflammatory response plays an important role and it is evidenced that turpentine (T) induced circulating inflammatory cytokines reduced survival rate and duration at 42 degrees C. Here we report the alteration in the protein expression in liver cells upon HS with and without T treatment using two dimensional gel electrophoresis (2-DE), tryptic in-gel digestion and MALDI-TOF-MS/MS approaches.Entities:
Year: 2009 PMID: 19126242 PMCID: PMC2626589 DOI: 10.1186/1477-5956-7-1
Source DB: PubMed Journal: Proteome Sci ISSN: 1477-5956 Impact factor: 2.480
Primer sequences used in quantitative real-time RT-PCR analysis of rat liver extracts
| 8393349 | fumarylacetoacetate hydrolase | FAH | 5'-gccagccctacacatttgat-3' | 123 |
| 50926831 | fructose-1,6-biphosphatase1 | FBP1 | 5'-tggaccccatgataactggt-3' | 123 |
| 8394009 | peptidylprolyl isomerase A | PPIA | 5'-agcactggggagaaaggatt-3' | 281 |
| 56689 | dimethylglycine dehydrogenase | DMGDH | 5'-attgacctgtctccgtttgg-3' | 166 |
| 12018252 | Transketolase | TKT | 5'-gccaggttcagagcaaaaag-3' | 141 |
| 40363265 | pyruvate kinase, liver and RBC | PK | 5'-agtcggaggtggaaattgtg-3' | 115 |
| 15459757 | carboxylic ester hydrolase | CEH | 5'-ggtctggctttttcttgctg-3' | 261 |
| 25453414 | arginosuccinate synthetase | ASS | 5'-ccatcctttaccacgctcat-3' | 267 |
| 42475962 | β-actin (house keeping gene) | 5'-tcatgaagtgtgacgttgacatccgt-3' | 285 |
Figure 1Representative image of 2D gels (silver stained). Rat liver protein profile analyzed by 2D-GE of (A) Control (T = 37°C) group (B) Heat stress (HS, T = 42°C) group (C) turpentine (T) treatment group and (D) T with HS (T+HS) group. First dimension performed using immobilized pH 3–10 gradient strips, followed by SDS-PAGE in 10–20% polyacrylamide gels.
List of altered protein expression upon turpentine (T) treatment
| Mitochondiral aldehyde dehydrogenase precursor | Liver glycogen phosphorylase isozyme |
| Mitochondiral aldehyde dehydrogenase | Alcohol dehydrogenase |
| Aldehyde dehydroganase 2 | Peptidylprolyl isomerase A |
| Tubulin, beta 5 | Microsomal GST 1 |
| Glutathione-S-Transferase (GST), Mu type 3 | Eukaryotic translation elongation factor 2 |
| GST, alpha type 2 | III beta-2-globin |
| Ribosomal protein S19 | |
| Hist2haa1 protein |
The expression pattern of genes as analyzed by Quantitative real time RT-PCR
| FAH | -4.55* | 0.76 | 16.76 | -11.18* | 1.27 | 11.34 |
| FBP1 | -1.06 | 0.05 | 4.72 | -1.23 | 0.15 | 12.14 |
| ASS | -2.21* | 0.33 | 15.12 | -2.07* | 0.41 | 19.74 |
| DMGDH | 2.73* | 0.57 | 20.95 | -2.99* | 0.69 | 23.31 |
| PK | 10.12* | 0.81 | 8.02 | 19.11* | 2.18 | 11.4 |
| TKT | 4.67* | 0.66 | 14.13 | -1.30 | 0.30 | 22.96 |
| PPIA | 18.01* | 2.21 | 12.27 | 3.02* | 0.64 | 21.06 |
| CEH | 34.54* | 7.92 | 22.94 | 4.69* | 0.65 | 13.90 |
The fold changes are mean of three values compared to control groups and using a cut-off of ≥ ± 2.0 for significance (*P < 0.05).
(a) The standard deviation (SD) quantifies variability or scatter of a data set, and is expressed in the same units as the data. If the data are sampled from a Gaussian distribution, then 95% of the values is expected to lie within two SD of the mean.
(b) Coefficient of variation (CV) represents the ratio of the SD to the mean of the data and indicates the relative variability of SD value to the mean value of the datasets.
(c) The samples were analyzed using QRT-PCR and the Ct data were imported into Microsoft excel. The mean fold change in expression of the target gene at HS and T+HS was normalized relative to the house keeping gene β-actin and calculated by the formula 2, where ΔΔCT = (CT Target – CT Actin) treated – (CT Target – CT Actin) control. The mean ± SD values of β-actin calculated for control, HS and T+HS were 18.72 ± 0.516, 24.04 ± 0.106 and 25.78 ± 0.092 respectively.