| Literature DB >> 19116018 |
Jian-na Li1, Chong-jin Feng, Yong-jun Lu, Hui-jun Li, Zheng Tu, Gui-qing Liao, Chun Liang.
Abstract
BACKGROUND: The tongue squamous cell carcinomas (SCCs) are characterized by high mitotic activity, and early detection is desirable. Overexpression of the DNA replication-initiation proteins has been associated with dysplasia and malignancy. Our aim was to determine whether these proteins are useful biomarkers for assessing the development of tongue SCC.Entities:
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Year: 2008 PMID: 19116018 PMCID: PMC2648984 DOI: 10.1186/1471-2407-8-395
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Clinicopathological parameters and mRNA expression in the patients (n = 64)
| Age (years) | |||||
| Median 54 (range 17–82) | |||||
| Sex | |||||
| Male | 33(52%) | 2.17E-03 ± 8.24E-04 | 1.10 ± 0.44 | 1.20 ± 0.24 | 2.17 ± 0.41 |
| Female | 31(48%) | 6.28E-03 ± 1.97E-03 | 1.04 ± 0.34 | 1.28 ± 0.29 | 2.67 ± 0.89 |
| Epithelial dysplasia (precancerous, n = 31) | |||||
| Mild | 8(26%) | 4.68E-04 ± 1.42E-04 | 0.64 ± 0.14 | 0.19 ± 0.05 | 0.35 ± 0.72 |
| Moderate | 8(26%) | 6.59E-03 ± 3.20E-03 | 0.99 ± 0.20 | 1.03 ± 0.18 | 2.29 ± 0.85 |
| Severe | 15(48%) | 8.28E-03 ± 3.40E-03 | 1.94 ± 0.36 | 2.48 ± 0.35 | 3.32 ± 0.54 |
| Histological grade (SCC, n = 33) | |||||
| G1 | 13(40%) | 6.87E-03 ± 2.67E-03 | 0.92 ± 0.19 | 1.15 ± 0.22 | 2.48 ± 0.82 |
| G2 | 10(30%) | 7.87E-03 ± 6.51E-04 | 0.72 ± 0.17 | 0.99 ± 0.30 | 1.97 ± 0.59 |
| G3 | 10(30%) | 8.61E-03 ± 1.30E-03 | 1.40 ± 0.30 | 1.73 ± 0.73 | 2.45 ± 0.13 |
| T-stage | |||||
| T1 | 10(34%) | 7.61E-03 ± 4.45E-03 | 1.01 ± 0.27 | 0.71 ± 0.20 | 3.17 ± 0.93 |
| T2 | 19(66%) | 5.02E-03 ± 7.62E-04 | 0.94 ± 0.14 | 1.56 ± 0.42 | 1.57 ± 0.44 |
| Lymph node metastases | |||||
| N0 | 12(41%) | 6.11E-04 ± 1.66E-04 | 0.74 ± 0.16 | 0.60 ± 0.15 | 1.27 ± 0.35 |
| N1 | 11(38%) | 3.50E-03 ± 1.02E-03 | 0.90 ± 0.15 | 1.03 ± 0.64 | 2.00 ± 0.52 |
| N2 | 6(21%) | 1.02E-02 ± 7.03E-03 | 1.28 ± 0.28 | 2.00 ± 0.42 | 3.54 ± 0.15 |
| Clinical stage | |||||
| I | 4(13%) | 4.21E-04 ± 3.08E-04 | 0.89 ± 0.14 | 0.15 ± 0.04 | 1.13 ± 0.36 |
| II | 8(28%) | 8.02E-04 ± 1.13E-04 | 0.74 ± 0.16 | 0.85 ± 0.21 | 1.55 ± 0.46 |
| III | 11(38%) | 3.50E-03 ± 1.02E-03 | 1.07 ± 0.28 | 1.03 ± 0.64 | 2.01 ± 0.52 |
| IV | 6(21%) | 1.02E-02 ± 7.03E-03 | 1.78 ± 0.82 | 2.00 ± 0.42 | 3.54 ± 0.15 |
T-stage (tumor size): Tl, < 2 cm; T2, 2 to 4 cm; T3 > 4 cm
G1, highly differentiated; G2, moderately differentiated; G3, poorly differentiated
Stage I, T1N0M0; stage II, T2N0M0; stage III, T3N0M0, T1-3N1-2M0; stage IV, T4N0-3M0
Shown is quantitative gene expression analysis by QRT-PCR in different formalin-fixed, paraffin-embedded specimens. Levels of CDC6, CDT1, MCM2 and CDC45 mRNA were determined by QRT-PCR and all measurements are shown relative to the expression levels of the β-actin housekeeping gene. Shown are the mean normalized values of three independent experiments, each in duplicates, using different cDNA samples.
Primer sequences and amplicon size of the genes analyzed by QRT-PCR
| NM_001101.2 | F: 5'-ATCCAGGCTGTGCTATCC-3' | 105 bp | |
| R: 5'-GGCATACCCCTCGTAGAT-3' | |||
| U77949.1 | F: 5'-TGTCAAAAGCCAGACTAT-3' | 88 bp | |
| R: 5'-GTGAATAAGACCAACCCT-3' | |||
| AF053074.1 | F: 5'-TGGACTGCACACGGATCT-3' | 106 bp | |
| R: 5'-AACCTGGCTGCGGTATAG-3' | |||
| NM_004526.2 | F: 5'-AGGCAGCATCCCCATTAC-3' | 89 bp | |
| R: 5'-TCACATAGTCCCGCAGAT-3' | |||
| NM_030928.2 | F: 5'-ATCCGCACCGACACCTAC-3' | 135 bp | |
| R: 5'-TCTGAAGCCCACGTCTGT-3' |
Figure 1CDC6, CDT1, MCM2, CDC45 and β-actin standard curves. SYBR GREEN I standard curves for CDC6, CDT1, MCM2, CDC45 and β-actin were obtained by amplifying five serial dilutions of standards known concentration (102–106). The linearity of the plots shows the coefficient of correlation for five genes. R2 > 0.994.
Figure 2Box plots for the normalized expression levels of CDC6 (A), CDT1 (B), MCM2 (C) and CDC45 (D) in mild, moderate and severe epithelial dysplasia and tongue SCC. The box represents 50% quartiles (above 25% and below 75%) and the solid line within each box is the median gene expression value. The small circles represent the outliers.
Relationship between clinicopathological parameters and CDC6, CDT1, MCM2 and CDC45 mRNA expression
| correlation( | 0.323 | 0.498 | 0.592 | 0.451 |
| 0.027 | 0.000 | 0.000 | 0.001 |
Figure 3Relationship between the expression of CDC6 and CDT1 (A), and of CDC45 and MCM2 (B) in dysplasia and tongue SCC. The scatterplots suggested that the relationship could be modeled as linear. A significant correlation was observed (p = 0.013 and P = 0.037 respectively).
Figure 4Receiver operating characteristics (ROC) curve of normalized expression of CDC6, CDT1, MCM2, and CDC45. Area under the curve (AUC) of 1.0 represents a "perfect" diagnostic test without any false negative or false positive results.