Literature DB >> 19113381

Advillin folding takes place on a hypersurface of small dimensionality.

Stefano Piana1, Alessandro Laio.   

Abstract

All-atom explicit-solvent molecular dynamics simulations have been used to investigate the topological structure of the space explored during folding by the c-terminal fragment of the Advillin headpiece, a 36 amino-acid protein. A fractal dimension analysis shows that the hypersurface explored during the folding process has an approximate dimensionality of only three. It is shown that this low dimensionality persists well above the unfolding temperature and is not present in simple coarse-grained models.

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Year:  2008        PMID: 19113381     DOI: 10.1103/PhysRevLett.101.208101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  9 in total

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7.  Estimating the intrinsic dimension of datasets by a minimal neighborhood information.

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Review 8.  Insights from coarse-grained Gō models for protein folding and dynamics.

Authors:  Ronald D Hills; Charles L Brooks
Journal:  Int J Mol Sci       Date:  2009-03-02       Impact factor: 6.208

Review 9.  Collective variable-based enhanced sampling and machine learning.

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Journal:  Eur Phys J B       Date:  2021-10-20       Impact factor: 1.500

  9 in total

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