Literature DB >> 19113163

Nonspecific interactions in spontaneous assembly of empty versus functional single-stranded RNA viruses.

Antonio Siber1, Rudolf Podgornik.   

Abstract

We investigate the influence of salt concentration, charge on viral proteins and the length of single-stranded RNA (ssRNA) molecule on the spontaneous assembly of viruses. Only the nonspecific interactions are assumed to guide the assembly, i.e., we exclude any chemical specificity that may lock the viral proteins and ssRNA in preferred configurations. We demonstrate that the electrostatic interactions screened by the salt in the solution impose strong limits on viral composition that can be achieved by spontaneous assembly. In particular, we show that viruses whose ssRNA carries more than twice the amount of charge that is located on the viral proteins, cannot be assembled spontaneously. We find that the spatial distribution of protein charge is important for the energetics of the assembly. We also show that the pressures that act on the viruses as a result of attractive protein-ssRNA electrostatic interactions are at least an order of magnitude smaller than is the case with bacteriophage viruses that contain double-stranded DNA molecule.

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Year:  2008        PMID: 19113163     DOI: 10.1103/PhysRevE.78.051915

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  32 in total

1.  Langevin dynamics simulation of polymer-assisted virus-like assembly.

Authors:  J P Mahalik; M Muthukumar
Journal:  J Chem Phys       Date:  2012-04-07       Impact factor: 3.488

2.  Thermodynamic basis for the genome to capsid charge relationship in viral encapsidation.

Authors:  Christina L Ting; Jianzhong Wu; Zhen-Gang Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

3.  Mechanisms of capsid assembly around a polymer.

Authors:  Aleksandr Kivenson; Michael F Hagan
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

4.  Collapse and hybridization of RNA: view from replica technique approach.

Authors:  Y Sh Mamasakhlisov; S Bellucci; Shura Hayryan; H Caturyan; Z Grigoryan; Chin-Kun Hu
Journal:  Eur Phys J E Soft Matter       Date:  2015-09-21       Impact factor: 1.890

5.  Modeling Viral Capsid Assembly.

Authors:  Michael F Hagan
Journal:  Adv Chem Phys       Date:  2014       Impact factor: 1.000

6.  A theory for viral capsid assembly around electrostatic cores.

Authors:  Michael F Hagan
Journal:  J Chem Phys       Date:  2009-03-21       Impact factor: 3.488

7.  Adsorption and encapsulation of flexible polyelectrolytes in charged spherical vesicles.

Authors:  H R Shojaei; M Muthukumar
Journal:  J Chem Phys       Date:  2017-06-28       Impact factor: 3.488

8.  Electrostatics-Driven Inflation of Elastic Icosahedral Shells as a Model for Swelling of Viruses.

Authors:  Anže Lošdorfer Božič; Antonio Šiber
Journal:  Biophys J       Date:  2018-08-07       Impact factor: 4.033

9.  Density functional theory for encapsidated polyelectrolytes: a comparison with Monte Carlo simulation.

Authors:  Zhehui Jin; Jianzhong Wu
Journal:  J Chem Phys       Date:  2012-07-28       Impact factor: 3.488

10.  An examination of the electrostatic interactions between the N-terminal tail of the Brome Mosaic Virus coat protein and encapsidated RNAs.

Authors:  Peng Ni; Zhao Wang; Xiang Ma; Nayaran Chandra Das; Paul Sokol; Wah Chiu; Bogdan Dragnea; Michael Hagan; C Cheng Kao
Journal:  J Mol Biol       Date:  2012-04-01       Impact factor: 5.469

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