Literature DB >> 19111181

Methods to determine mRNA half-life in Saccharomyces cerevisiae.

Jeff Coller1.   

Abstract

Much of our understanding of eukaryotic mRNA decay has come from studies in budding yeast, Saccharomyces cerevisiae. The facile nature of genetic and biochemical manipulations in yeast has allowed detailed investigations into the mRNA decay pathway and the identification of critical factors required for each step. Discussed herein are standard protocols for measuring mRNA half-lives in yeast. It should be noted, however, that variations of these assays are possible. In addition, a few a priori considerations are addressed.

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Year:  2008        PMID: 19111181     DOI: 10.1016/S0076-6879(08)02614-1

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  15 in total

1.  MicroRNA-let-7a expression is increased in the mesangial cells of NZB/W mice and increases IL-6 production in vitro.

Authors:  Cristen B Chafin; Nicole L Regna; Rujuan Dai; David L Caudell; Christopher M Reilly
Journal:  Autoimmunity       Date:  2013-09       Impact factor: 2.815

2.  Not4-dependent translational repression is important for cellular protein homeostasis in yeast.

Authors:  Steffen Preissler; Julia Reuther; Miriam Koch; Annika Scior; Michael Bruderek; Tancred Frickey; Elke Deuerling
Journal:  EMBO J       Date:  2015-05-13       Impact factor: 11.598

3.  Paf1 and Ctr9, core components of the PAF1 complex, maintain low levels of telomeric repeat containing RNA.

Authors:  Joana Rodrigues; David Lydall
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

4.  Nutrients and the Pkh1/2 and Pkc1 protein kinases control mRNA decay and P-body assembly in yeast.

Authors:  Guangzuo Luo; Michael Costanzo; Charles Boone; Robert C Dickson
Journal:  J Biol Chem       Date:  2010-12-16       Impact factor: 5.157

5.  Spt6 Association with RNA Polymerase II Directs mRNA Turnover During Transcription.

Authors:  Raghuvar Dronamraju; Austin J Hepperla; Yoichiro Shibata; Alexander T Adams; Terry Magnuson; Ian J Davis; Brian D Strahl
Journal:  Mol Cell       Date:  2018-06-21       Impact factor: 17.970

6.  Oxidative products from alcohol metabolism differentially modulate pro-inflammatory cytokine expression in Kupffer cells and hepatocytes.

Authors:  Daoyin Dong; Wei Zhong; Qian Sun; Wenliang Zhang; Xinguo Sun; Zhanxiang Zhou
Journal:  Cytokine       Date:  2016-06-14       Impact factor: 3.861

7.  Stochastic modeling of expression kinetics identifies messenger half-lives and reveals sequential waves of co-ordinated transcription and decay.

Authors:  Filippo Cacace; Paola Paci; Valerio Cusimano; Alfredo Germani; Lorenzo Farina
Journal:  PLoS Comput Biol       Date:  2012-11-08       Impact factor: 4.475

8.  Recruitment, Duplex Unwinding and Protein-Mediated Inhibition of the Dead-Box RNA Helicase Dbp2 at Actively Transcribed Chromatin.

Authors:  Wai Kit Ma; Bishnu P Paudel; Zheng Xing; Ivan G Sabath; David Rueda; Elizabeth J Tran
Journal:  J Mol Biol       Date:  2016-02-11       Impact factor: 5.469

9.  UV damage regulates alternative polyadenylation of the RPB2 gene in yeast.

Authors:  Lijian Yu; Michael R Volkert
Journal:  Nucleic Acids Res       Date:  2013-01-25       Impact factor: 16.971

10.  Yeast Gis2 and its human ortholog CNBP are novel components of stress-induced RNP granules.

Authors:  Marta Rojas; George W Farr; Cesar F Fernandez; Laura Lauden; John C McCormack; Sandra L Wolin
Journal:  PLoS One       Date:  2012-12-21       Impact factor: 3.240

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