Literature DB >> 19110069

In vitro non-homologous DNA end joining assays--the 20th anniversary.

Elzbieta Pastwa1, Richard I Somiari, Mariusz Malinowski, Stella B Somiari, Thomas A Winters.   

Abstract

DNA double-strand breaks (DSBs) are the most serious forms of DNA damage in cells. Unrepaired or misrepaired DSBs account for some of the genetic instabilities that lead to mutations or cell death, and consequently, to cancer predisposition. In human cells non-homologous DNA end joining (NHEJ) is the main repair mechanism of these breaks. Systems for DNA end joining study have been developing during the last 20 years. New assays have some advantages over earlier in vitro DSBs repair assays because they are less time-consuming, allow the use of clinical material and examination of the joining DNA ends produced physiologically in mammalian cells. Proteins involved in NHEJ repair pathway can serve as biomarkers or molecular targets for anticancer drugs. Results of studies on NHEJ in cancer could help to select potent repair inhibitors that may selectively sensitize tumor cells to ionizing radiation (IR) and chemotherapy. Here, we review the principles and practice of in vitro NHEJ assays and provide some insights into the future prospects of this assay in cancer diagnosis and treatment.

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Year:  2008        PMID: 19110069      PMCID: PMC2901157          DOI: 10.1016/j.biocel.2008.11.007

Source DB:  PubMed          Journal:  Int J Biochem Cell Biol        ISSN: 1357-2725            Impact factor:   5.652


  62 in total

1.  Determination and analysis of site-specific 125I decay-induced DNA double-strand break end-group structures.

Authors:  Kamal Datta; Michael Weinfeld; Ronald D Neumann; Thomas A Winters
Journal:  Radiat Res       Date:  2007-02       Impact factor: 2.841

2.  End-joining of free radical-mediated DNA double-strand breaks in vitro is blocked by the kinase inhibitor wortmannin at a step preceding removal of damaged 3' termini.

Authors:  X Y Gu; R A Bennett; L F Povirk
Journal:  J Biol Chem       Date:  1996-08-16       Impact factor: 5.157

3.  The rejoining of double-strand breaks in DNA by human cell extracts.

Authors:  P North; A Ganesh; J Thacker
Journal:  Nucleic Acids Res       Date:  1990-11-11       Impact factor: 16.971

4.  The tyrosyl-DNA phosphodiesterase Tdp1 is a member of the phospholipase D superfamily.

Authors:  H Interthal; J J Pouliot; J J Champoux
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

5.  Involvement of human polynucleotide kinase in double-strand break repair by non-homologous end joining.

Authors:  Claire Chappell; Les A Hanakahi; Feridoun Karimi-Busheri; Michael Weinfeld; Stephen C West
Journal:  EMBO J       Date:  2002-06-03       Impact factor: 11.598

6.  Mutation of TDP1, encoding a topoisomerase I-dependent DNA damage repair enzyme, in spinocerebellar ataxia with axonal neuropathy.

Authors:  Hiroshi Takashima; Cornelius F Boerkoel; Joy John; Gulam Mustafa Saifi; Mustafa A M Salih; Dawna Armstrong; Yuxin Mao; Florante A Quiocho; Benjamin B Roa; Masanori Nakagawa; David W Stockton; James R Lupski
Journal:  Nat Genet       Date:  2002-09-16       Impact factor: 38.330

Review 7.  Non-homologous DNA end joining.

Authors:  Elzbieta Pastwa; Janusz Błasiak
Journal:  Acta Biochim Pol       Date:  2003       Impact factor: 2.149

8.  Development of a rapid, small-scale DNA repair assay for use on clinical samples.

Authors:  Christine P Diggle; Johanne Bentley; Anne E Kiltie
Journal:  Nucleic Acids Res       Date:  2003-08-01       Impact factor: 16.971

9.  Cadmium inhibits non-homologous end-joining and over-activates the MRE11-dependent repair pathway.

Authors:  Muriel Viau; Jérôme Gastaldo; Zuzana Bencokova; Aurélie Joubert; Nicolas Foray
Journal:  Mutat Res       Date:  2008-05-02       Impact factor: 2.433

10.  Inhibition of poly(ADP-ribose) polymerase enhances cell death and improves tumor growth delay in irradiated lung cancer models.

Authors:  Jeffrey M Albert; Carolyn Cao; Kwang Woon Kim; Christopher D Willey; Ling Geng; Dakai Xiao; Hong Wang; Alan Sandler; David H Johnson; Alexander D Colevas; Jennifer Low; Mace L Rothenberg; Bo Lu
Journal:  Clin Cancer Res       Date:  2007-05-15       Impact factor: 12.531

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  11 in total

1.  Base damage immediately upstream from double-strand break ends is a more severe impediment to nonhomologous end joining than blocked 3'-termini.

Authors:  Kamal Datta; Shubhadeep Purkayastha; Ronald D Neumann; Elzbieta Pastwa; Thomas A Winters
Journal:  Radiat Res       Date:  2011-01       Impact factor: 2.841

2.  Coilin interacts with Ku proteins and inhibits in vitro non-homologous DNA end joining.

Authors:  Venkatramreddy Velma; Zunamys I Carrero; Angela M Cosman; Michael D Hebert
Journal:  FEBS Lett       Date:  2010-11-09       Impact factor: 4.124

3.  Ovarian Cancers Harbor Defects in Nonhomologous End Joining Resulting in Resistance to Rucaparib.

Authors:  Aiste McCormick; Peter Donoghue; Michelle Dixon; Richard O'Sullivan; Rachel L O'Donnell; James Murray; Angelika Kaufmann; Nicola J Curtin; Richard J Edmondson
Journal:  Clin Cancer Res       Date:  2016-10-04       Impact factor: 12.531

4.  The NF90/NF45 complex participates in DNA break repair via nonhomologous end joining.

Authors:  Raghavendra A Shamanna; Mainul Hoque; Anita Lewis-Antes; Edouard I Azzam; David Lagunoff; Tsafi Pe'ery; Michael B Mathews
Journal:  Mol Cell Biol       Date:  2011-10-03       Impact factor: 4.272

5.  Base excision DNA repair levels in mitochondrial lysates of Alzheimer's disease.

Authors:  Chandrika Canugovi; Raghavendra A Shamanna; Deborah L Croteau; Vilhelm A Bohr
Journal:  Neurobiol Aging       Date:  2014-01-08       Impact factor: 4.673

6.  RECQ helicase RECQL4 participates in non-homologous end joining and interacts with the Ku complex.

Authors:  Raghavendra A Shamanna; Dharmendra Kumar Singh; Huiming Lu; Gladys Mirey; Guido Keijzers; Bernard Salles; Deborah L Croteau; Vilhelm A Bohr
Journal:  Carcinogenesis       Date:  2014-06-18       Impact factor: 4.944

7.  Single-stranded DNA oligomers stimulate error-prone alternative repair of DNA double-strand breaks through hijacking Ku protein.

Authors:  Ying Yuan; Sébastien Britton; Christine Delteil; Julia Coates; Stephen P Jackson; Nadia Barboule; Philippe Frit; Patrick Calsou
Journal:  Nucleic Acids Res       Date:  2015-09-08       Impact factor: 16.971

8.  Non-homologous end joining repair in Xenopus egg extract.

Authors:  Songli Zhu; Aimin Peng
Journal:  Sci Rep       Date:  2016-06-21       Impact factor: 4.379

9.  Folate Repletion after Deficiency Induces Irreversible Genomic and Transcriptional Changes in Human Papillomavirus Type 16 (HPV16)-Immortalized Human Keratinocytes.

Authors:  Claudia Savini; Ruwen Yang; Larisa Savelyeva; Elke Göckel-Krzikalla; Agnes Hotz-Wagenblatt; Frank Westermann; Frank Rösl
Journal:  Int J Mol Sci       Date:  2019-03-04       Impact factor: 5.923

10.  Development of an assay to measure mutagenic non-homologous end-joining repair activity in mammalian cells.

Authors:  Ranjit S Bindra; Alexander G Goglia; Maria Jasin; Simon N Powell
Journal:  Nucleic Acids Res       Date:  2013-04-12       Impact factor: 19.160

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