| Literature DB >> 19105801 |
Eva Barroso1, Lara P Fernandez, Roger L Milne, Guillermo Pita, Elena Sendagorta, Uxua Floristan, Marta Feito, Jose A Aviles, Manuel Martin-Gonzalez, Jose I Arias, Pilar Zamora, Monserrat Blanco, Pablo Lazaro, Javier Benitez, Gloria Ribas.
Abstract
BACKGROUND: Vitamin D serum levels have been found to be related to sun exposure and diet, together with cell differentiation, growth control and consequently, cancer risk. Vitamin D receptor (VDR) genotypes may influence cancer risk; however, no epidemiological studies in sporadic breast cancer (BC) or malignant melanoma (MM) have been performed in a southern European population. In this study, the VDR gene has been evaluated in two epithelial cancers BC and MM.Entities:
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Year: 2008 PMID: 19105801 PMCID: PMC2639605 DOI: 10.1186/1471-2407-8-385
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Allelic frequencies comparison between cases and controls in the four SNPs tested, in both BC and MM pathologies
| rs4516035 | 5' upstrem | T > C | 0.41 | 0.39 | 0.27 | 0.44 | 0.40 | 0.28 | 0.45 | |
| rs2228570 | Met1Thr | G > A | 0.37 | 0.34 | 0.08 | 0.31 | 0.33 | 0.33 | 0.44 | |
| rs731236 | Ile352 | T > C | 0.38 | 0.43 | 0.41 | 0.39 | 0.50 | 0.44 | ||
| rs739837 | 3' utr | T > G | 0.46 | 0.46 | 0.90 | 0.47 | 0.50 | 0.74 | 0.43 | |
MAF, Minor Allele Frequency.
Statistically significant results (p < 0.05) indicated in bold.
* Correspondence of nomenclature of SNP alleles are as following: the FokI alleles G and A correspond to F and f, respectively; the TaqI alleles T and C
correspond to T and t, respectively; and BglI alleles T and G correspond to B and b, respectively.
++p-value, difference of MAF between cases and controls.
Genotype frequencies comparison between cases and controls in the four SNPs tested, in both BC and MM pathologies
| rs4516035 | Codominant | CT | 1.20 (0.92–1.56) | 0.19 | 1.15 (0.83–1.58) | 0.40 | 1.08 (0.73–1.60) | 0.69 | 1.17 (0.70–1.96) | 0.54 |
| CC | 1.16 (0.82–1.65) | 0.41 | 0.97 (0.63–1.49) | 0.88 | 1.51 (0.90–2.53) | 0.12 | 1.79 (0.91–3.53) | 0.09 | ||
| Per minor allele | C- | 1.09 (0.92–1.29) | 0.30 | 1.01 (0.82–1.25) | 0.91 | 1.20 (0.94–1.55) | 0.15 | 1.31 (0.94–1.81) | 0.11 | |
| rs2228570 | Codominant | GA | 1.14 (0.88–1.47) | 0.32 | 1.26 (0.89–1.66) | 0.22 | 1.09 (0.75–1.57) | 0.66 | 1.23 (0.76–2.01) | 0.40 |
| AA | 1.41 (0.96–2.08) | 0.08 | 0.69 (0.38–1.25) | 0.22 | 1.23 (0.55–2.73) | 0.61 | ||||
| Per minor allele | A- | 1.17 (0.98–1.40) | 0.08 | 0.91 (0.70–1.19) | 0.49 | 1.15 (0.81–1.64) | 0.43 | |||
| rs731236 | Codominant | CT | 0.84 (0.64–1.09) | 0.19 | 0.82 (0.59–1.13) | 0.22 | 1.26 (0.85–1.87) | 0.25 | 1.06 (0.63–1.78) | 0.81 |
| CC | 0.72 (0.48–1.09) | 0.13 | 1.09 (0.64–1.84) | 0.76 | 1.17 (0.57–2.39) | 0.66 | ||||
| Per minor allele | C- | 0.85 (0.69–1.03) | 0.10 | 1.08 (0.84–1.40) | 0.55 | 1.08 (0.77–1.52) | 0.66 | |||
| rs739837 | Codominant | TG | 0.96 (0.72–1.27) | 0.76 | 0.96 (0.69–1.35) | 0.83 | 0.89 (0.59–1.36) | 0.60 | 0.64 (0.36–1.13) | 0.12 |
| GG | 1.03 (0.74–1.44) | 0.86 | 1.30 (0.87–1.96) | 0.20 | 0.82 (0.50–1.36) | 0.45 | 0.69 (0.35–1.38) | 0.29 | ||
| Per minor allele | G- | 1.01 (0.86–1.20) | 0.87 | 1.13 (0.92–1.38) | 0.25 | 0.91 (0.71–1.17) | 0.45 | 0.83 (0.59–1.16) | 0.28 | |
*OR: Odds Ratio estimated under codominant and log-additive models; CI: Confidence Interval.
†Adjusted for age at diagnosis, number of live births, age at menarche and menopause status.
‡Adjusted for eye colour, hair colour, skin colour, number of nevi, lentigines, and childhood sunburn.
Statistically significant results (p < 0.05) indicated in bold.
Personal, clinical and tumoral phenotypic characteristics comparison from both BC and MM pathologies in the four SNPs tested
| Metastasis‡ | 0.53 (0.25–1.11) | 0.09 | 1.00 (0.51–1.96) | 0.99 | 1.20 (0.63–2.27) | 0.58 | 1.11 (0.57–2.17) | 0.75 | |
| Tumor histology (Invasive)‡ | 0.87 (0.57–1.32) | 0.51 | 0.83 (0.54–1.28) | 0.40 | 1.10 (0.72–1.69) | 0.66 | 0.75 (0.49–1.15) | 0.19 | |
| Tumor grade (Grade > 1)‡ | 0.93 (0.67–1.30) | 0.68 | 1.19 (0.84–1.68) | 0.33 | 1.22 (0.87–1.70) | 0.26 | 0.76 (0.54–1.05) | 0.09 | |
| Tumor size (> 2 cm)‡ | 1.02 (0.77–1.35) | 0.92 | 0.98 (0.73–1.30) | 0.88 | 1.14 (0.86–1.51) | 0.37 | 0.81 (0.61–1.08) | 0.15 | |
| Nodal involvement‡ | 0.93 (0.70–1.23) | 0.61 | 0.95 (0.71–1.27) | 0.72 | 0.94 (0.71–1.25) | 0.69 | 1.09 (0.82–1.45) | 0.54 | |
| ER positive‡ | 0.96 (0.66–1.41) | 0.85 | 1.24 (0.84–1.84) | 0.28 | 1.31 (0.90–1.90) | 0.16 | 1.02 (0.71–1.46) | 0.91 | |
| PR positive‡ | 0.92 (0.67–1.26) | 0.60 | 1.12 (0.80–1.55) | 0.51 | 0.91 (0.67–1.24) | 0.56 | 1.12 (0.83–1.51) | 0.48 | |
| Light Eye Colour+ | 1.03 (0.79–1.34) | 0.82 | 0.91 (0.69–1.21) | 0.52 | 0.92 (0.70–1.21) | 0.56 | 1.06 (0.81–1.39) | 0.64 | |
| Blond/Red Hair Colour+ | 0.99 (0.71–1.40) | 0.99 | 0.78 (0.55–1.13) | 0.19 | 1.02 (0.73–1.44) | 0.89 | 1.45 (0.89–1.74) | 0.20 | |
| Fair Skin Colour+ | 0.97 (0.75–1.26) | 0.83 | 1.08 (0.82–1.42) | 0.57 | 0.86 (0.66–1.12) | 0.25 | |||
| N° of Nevi = 50+ | 0.97 (0.66–1.40) | 0.85 | 1.00 (0.67–1.49) | 0.99 | 1.06 (0.72–1.54) | 0.77 | 1.34 (0.90–1.97) | 0.15 | |
| Presence of Lentigines+ | 1.03 (0.79–1.34) | 0.84 | 0.79 (0.59–1.05) | 0.11 | 1.20 (0.91–1.58) | 0.21 | 0.90 (0.69–1.18) | 0.45 | |
| Presence of Childhood Sunburns+ | 1.12 (0.87–1.45) | 0.39 | 1.10 (0.84–1.43) | 0.49 | 0.91 (0.70–1.19) | 0.50 | |||
| Other MM‡ | 1.26 (0.52–3.03) | 0.61 | 2.43 (0.95–6.19) | 0.060 | 1.83 (0.73–4.56) | 0.19 | 0.70 (0.26–1.85) | 0.47 | |
| Fitzpatrick's photoype I/II‡ | 0.74 (0.51–1.09) | 0.13 | 0.85 (0.63–1.46) | 0.89 | 0.91 (0.62–1.34) | 0.63 | 1.43 (0.97–2.12) | 0.070 | |
| Tumor Location (Head/Neck/Trunk)‡ | 1.16 (0.79–1.72) | 0.45 | 1.16 (0.81–1.65) | 0.42 | 1.17 (0.82–1.67) | 0.38 | |||
| Breslow Index (T2/T3/T4)‡ | 1.04 (0.72–1.51) | 0.82 | 1.20 (0.80–1.79) | 0.38 | 0.84 (0.57–1.24) | 0.38 | 1.01 (0.69–1.47) | 0.96 | |
*OR: Odds Ratio per minor allele; CI: Confidence Interval, unadjusted p-values.
+Cases and controls pooled for each variable.
‡Cases only considered.
Statistically significant results (p < 0.05) indicated in bold.