Literature DB >> 19094041

Comparison of single-particle analysis and electron tomography approaches: an overview.

S Jonić1, C O S Sorzano, N Boisset.   

Abstract

Three-dimensional structure of a wide range of biological specimens can be computed from images collected by transmission electron microscopy. This information integrated with structural data obtained with other techniques (e.g., X-ray crystallography) helps structural biologists to understand the function of macromolecular complexes and organelles within cells. In this paper, we compare two three-dimensional transmission electron microscopy techniques that are becoming more and more related (at the image acquisition level as well as the image processing one): electron tomography and single-particle analysis. The first one is currently used to elucidate the three-dimensional structure of cellular components or smaller entire cells, whereas the second one has been traditionally applied to structural studies of macromolecules and macromolecular complexes. Also, we discuss possibilities for their integration with other structural biology techniques for an integrative study of living matter from proteins to whole cells.

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Year:  2008        PMID: 19094041     DOI: 10.1111/j.1365-2818.2008.02119.x

Source DB:  PubMed          Journal:  J Microsc        ISSN: 0022-2720            Impact factor:   1.758


  6 in total

Review 1.  Bioanalysis of eukaryotic organelles.

Authors:  Chad P Satori; Michelle M Henderson; Elyse A Krautkramer; Vratislav Kostal; Mark D Distefano; Mark M Distefano; Edgar A Arriaga
Journal:  Chem Rev       Date:  2013-04-10       Impact factor: 60.622

2.  Three-dimensional asymmetric reconstruction of tailed bacteriophage.

Authors:  Jinghua Tang; Robert S Sinkovits; Timothy S Baker
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

3.  Protein secondary structure determination by constrained single-particle cryo-electron tomography.

Authors:  Alberto Bartesaghi; Federico Lecumberry; Guillermo Sapiro; Sriram Subramaniam
Journal:  Structure       Date:  2012-12-05       Impact factor: 5.006

Review 4.  A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy.

Authors:  C O S Sorzano; J Vargas; J Otón; J M de la Rosa-Trevín; J L Vilas; M Kazemi; R Melero; L Del Caño; J Cuenca; P Conesa; J Gómez-Blanco; R Marabini; J M Carazo
Journal:  Biomed Res Int       Date:  2017-09-17       Impact factor: 3.411

5.  Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening.

Authors:  Vebjorn Ljosa; Anne E Carpenter
Journal:  PLoS Comput Biol       Date:  2009-12-24       Impact factor: 4.475

Review 6.  Three dimensional electron microscopy and in silico tools for macromolecular structure determination.

Authors:  Subhomoi Borkotoky; Chetan Kumar Meena; Mohammad Wahab Khan; Ayaluru Murali
Journal:  EXCLI J       Date:  2013-04-24       Impact factor: 4.068

  6 in total

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