Literature DB >> 19091741

Crystal structure of the N-terminal domain of anaphase-promoting complex subunit 7.

Dohyun Han1, Kyunggon Kim, Yeonjung Kim, Yup Kang, Ji Yoon Lee, Youngsoo Kim.   

Abstract

Anaphase-promoting complex or cyclosome (APC/C) is an unusual E3 ubiquitin ligase and an essential protein that controls mitotic progression. APC/C includes at least 13 subunits, but no structure has been determined for any tetratricopeptide repeat (TPR)-containing subunit (Apc3 and -6-8) in the TPR subcomplex of APC/C. Apc7 is a TPR-containing subunit that exists only in vertebrate APC/C. Here we report the crystal structure of quad mutant of nApc7 (N-terminal fragment, residues 1-147) of human Apc7 at a resolution of 2.5 A. The structure of nApc7 adopts a TPR-like motif and has a unique dimerization interface, although the protein does not contain the conserved TPR sequence. Based on the structure of nApc7, in addition to previous experimental findings, we proposed a putative homodimeric structure for full-length Apc7. This model suggests that TPR-containing subunits self-associate and bind to adaptors and substrates via an IR peptide in TPR-containing subunits of APC/C.

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Year:  2008        PMID: 19091741      PMCID: PMC2685695          DOI: 10.1074/jbc.M804887200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  46 in total

1.  Three-dimensional structure of the anaphase-promoting complex.

Authors:  C Gieffers; P Dube; J R Harris; H Stark; J M Peters
Journal:  Mol Cell       Date:  2001-04       Impact factor: 17.970

Review 2.  The anaphase-promoting complex: proteolysis in mitosis and beyond.

Authors:  Jan-Michael Peters
Journal:  Mol Cell       Date:  2002-05       Impact factor: 17.970

Review 3.  Ongoing developments in CCP4 for high-throughput structure determination.

Authors:  M D Winn; A W Ashton; P J Briggs; C C Ballard; P Patel
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

4.  Design of stable alpha-helical arrays from an idealized TPR motif.

Authors:  Ewan R G Main; Yong Xiong; Melanie J Cocco; Luca D'Andrea; Lynne Regan
Journal:  Structure       Date:  2003-05       Impact factor: 5.006

Review 5.  The anaphase-promoting complex: it's not just for mitosis any more.

Authors:  J Wade Harper; Janet L Burton; Mark J Solomon
Journal:  Genes Dev       Date:  2002-09-01       Impact factor: 11.361

6.  TPR domain of NrfG mediates complex formation between heme lyase and formate-dependent nitrite reductase in Escherichia coli O157:H7.

Authors:  Dohyun Han; Kyunggon Kim; Jongkil Oh; Jungeun Park; Youngsoo Kim
Journal:  Proteins       Date:  2008-02-15

7.  Proteomics analysis identifies new components of the fission and budding yeast anaphase-promoting complexes.

Authors:  Hyun-Joo Yoon; Anna Feoktistova; Benjamin A Wolfe; Jennifer L Jennings; Andrew J Link; Kathleen L Gould
Journal:  Curr Biol       Date:  2002-12-10       Impact factor: 10.834

8.  Use of TLS parameters to model anisotropic displacements in macromolecular refinement.

Authors:  M D Winn; M N Isupov; G N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-01

9.  TPR subunits of the anaphase-promoting complex mediate binding to the activator protein CDH1.

Authors:  Hartmut C Vodermaier; Christian Gieffers; Sebastian Maurer-Stroh; Frank Eisenhaber; Jan-Michael Peters
Journal:  Curr Biol       Date:  2003-09-02       Impact factor: 10.834

10.  Searching protein structure databases with DaliLite v.3.

Authors:  L Holm; S Kääriäinen; P Rosenström; A Schenkel
Journal:  Bioinformatics       Date:  2008-09-25       Impact factor: 6.937

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  13 in total

1.  The APC/C subunit Cdc16/Cut9 is a contiguous tetratricopeptide repeat superhelix with a homo-dimer interface similar to Cdc27.

Authors:  Ziguo Zhang; Kiran Kulkarni; Sarah J Hanrahan; Andrew J Thompson; David Barford
Journal:  EMBO J       Date:  2010-10-05       Impact factor: 11.598

Review 2.  State of the APC/C: organization, function, and structure.

Authors:  Janel R McLean; Denis Chaix; Melanie D Ohi; Kathleen L Gould
Journal:  Crit Rev Biochem Mol Biol       Date:  2011-01-24       Impact factor: 8.250

3.  Removal of a consensus proline is not sufficient to allow tetratricopeptide repeat oligomerization.

Authors:  Amber L Bakkum; R Blake Hill
Journal:  Protein Sci       Date:  2017-07-25       Impact factor: 6.725

4.  A designed point mutant in Fis1 disrupts dimerization and mitochondrial fission.

Authors:  Jonathan P B Lees; Cara Marie Manlandro; Lora K Picton; Alexandra Z Ebie Tan; Salvador Casares; John M Flanagan; Karen G Fleming; R Blake Hill
Journal:  J Mol Biol       Date:  2012-07-09       Impact factor: 5.469

5.  Structural basis for the subunit assembly of the anaphase-promoting complex.

Authors:  Anne Schreiber; Florian Stengel; Ziguo Zhang; Radoslav I Enchev; Eric H Kong; Edward P Morris; Carol V Robinson; Paula C A da Fonseca; David Barford
Journal:  Nature       Date:  2011-02-10       Impact factor: 49.962

6.  Insights into anaphase promoting complex TPR subdomain assembly from a CDC26-APC6 structure.

Authors:  Jing Wang; Billy T Dye; Kanagalaghatta R Rajashankar; Igor Kurinov; Brenda A Schulman
Journal:  Nat Struct Mol Biol       Date:  2009-08-09       Impact factor: 15.369

7.  Molecular architecture and mechanism of the anaphase-promoting complex.

Authors:  Lei-Fu Chang; Ziguo Zhang; Jing Yang; Stephen H McLaughlin; David Barford
Journal:  Nature       Date:  2014-07-20       Impact factor: 49.962

8.  Atomic structure of the APC/C and its mechanism of protein ubiquitination.

Authors:  Leifu Chang; Ziguo Zhang; Jing Yang; Stephen H McLaughlin; David Barford
Journal:  Nature       Date:  2015-06-15       Impact factor: 49.962

9.  Atomic-Resolution Structures of the APC/C Subunits Apc4 and the Apc5 N-Terminal Domain.

Authors:  Nora B Cronin; Jing Yang; Ziguo Zhang; Kiran Kulkarni; Leifu Chang; Hiroyuki Yamano; David Barford
Journal:  J Mol Biol       Date:  2015-09-04       Impact factor: 5.469

10.  The four canonical tpr subunits of human APC/C form related homo-dimeric structures and stack in parallel to form a TPR suprahelix.

Authors:  Ziguo Zhang; Leifu Chang; Jing Yang; Nora Conin; Kiran Kulkarni; David Barford
Journal:  J Mol Biol       Date:  2013-04-11       Impact factor: 5.469

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