Literature DB >> 19091693

Ontologies of cellular networks.

Robert Arp1, Barry Smith.   

Abstract

As part of a series of workshops on different aspects of biomedical ontology sponsored by the National Center for Biomedical Ontology (NCBO), a workshop titled "Ontologies of Cellular Networks" took place in Newark, New Jersey, on 27 to 28 March 2008. This workshop included more than 30 participants from various backgrounds in biomedicine and bioinformatics. The goal of the workshop was to provide an introduction to the basic tools and methods of ontology, as well as to enhance coordination between groups already working on ontologies of cellular networks. The meeting focused on three questions: What is an ontology? What is a pathway? What is a cellular network?

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Mesh:

Year:  2008        PMID: 19091693      PMCID: PMC7141777          DOI: 10.1126/scisignal.150mr2

Source DB:  PubMed          Journal:  Sci Signal        ISSN: 1945-0877            Impact factor:   8.192


  3 in total

Review 1.  Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway.

Authors:  Richard J Orton; Oliver E Sturm; Vladislav Vyshemirsky; Muffy Calder; David R Gilbert; Walter Kolch
Journal:  Biochem J       Date:  2005-12-01       Impact factor: 3.857

2.  The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.

Authors:  Barry Smith; Michael Ashburner; Cornelius Rosse; Jonathan Bard; William Bug; Werner Ceusters; Louis J Goldberg; Karen Eilbeck; Amelia Ireland; Christopher J Mungall; Neocles Leontis; Philippe Rocca-Serra; Alan Ruttenberg; Susanna-Assunta Sansone; Richard H Scheuermann; Nigam Shah; Patricia L Whetzel; Suzanna Lewis
Journal:  Nat Biotechnol       Date:  2007-11       Impact factor: 54.908

3.  Towards ontology-driven navigation of the lipid bibliosphere.

Authors:  Christopher Jo Baker; Rajaraman Kanagasabai; Wee Tiong Ang; Anitha Veeramani; Hong-Sang Low; Markus R Wenk
Journal:  BMC Bioinformatics       Date:  2008       Impact factor: 3.169

  3 in total
  1 in total

1.  Comparative analysis of knowledge representation and reasoning requirements across a range of life sciences textbooks.

Authors:  Vinay K Chaudhri; Daniel Elenius; Andrew Goldenkranz; Allison Gong; Maryann E Martone; William Webb; Neil Yorke-Smith
Journal:  J Biomed Semantics       Date:  2014-12-18
  1 in total

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