Literature DB >> 19089882

Biological implications of the ribosome's stunning stereochemistry.

Ella Zimmerman1, Ada Yonath.   

Abstract

The ribosome's striking architecture is ingeniously designed for its efficient polymerase activity in the biosynthesis of proteins, which is a prerequisite for cell vitality. This elaborate architecture is comprised of a universal symmetrical region that connects all of the ribosomal functional centers involved in protein biosynthesis. Assisted by the mobility of selected ribosomal nucleotides, the symmetrical region provides the structural tools that are required not only for peptide bond formation, but also for fast and smooth successive elongation of nascent proteins. It confines the path along which the A-tRNA 3'-end is rotated into the P-site in concert with the overall tRNA/mRNA sideways movement, thus providing the required stereochemistry for peptide bond formation and substrate-mediated catalysis. The extreme flexibility of the nucleotides that facilitate peptide bond formation is being exploited to promote antibiotic selectivity and synergism, as well as to combat antibiotic resistance.

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Year:  2009        PMID: 19089882     DOI: 10.1002/cbic.200800554

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  9 in total

Review 1.  Origin and evolution of the ribosome.

Authors:  George E Fox
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-09       Impact factor: 10.005

Review 2.  Large facilities and the evolving ribosome, the cellular machine for genetic-code translation.

Authors:  Ada Yonath
Journal:  J R Soc Interface       Date:  2009-08-05       Impact factor: 4.118

Review 3.  Piece by piece: Building a ribozyme.

Authors:  Michael W Gray; Venkat Gopalan
Journal:  J Biol Chem       Date:  2020-01-17       Impact factor: 5.157

Review 4.  Protein folding at the exit tunnel.

Authors:  Daria V Fedyukina; Silvia Cavagnero
Journal:  Annu Rev Biophys       Date:  2011       Impact factor: 12.981

Review 5.  The Importance of Being Modified: The Role of RNA Modifications in Translational Fidelity.

Authors:  Paul F Agris; Amithi Narendran; Kathryn Sarachan; Ville Y P Väre; Emily Eruysal
Journal:  Enzymes       Date:  2017-04-22

Review 6.  Antibiotics from microbes: converging to kill.

Authors:  Michael A Fischbach
Journal:  Curr Opin Microbiol       Date:  2009-08-18       Impact factor: 7.934

7.  The place of RNA in the origin and early evolution of the genetic machinery.

Authors:  Günter Wächtershäuser
Journal:  Life (Basel)       Date:  2014-12-19

8.  The fluctuating ribosome: thermal molecular dynamics characterized by neutron scattering.

Authors:  Giuseppe Zaccai; Francesca Natali; Judith Peters; Martina Řihová; Ella Zimmerman; J Ollivier; J Combet; Marie-Christine Maurel; Anat Bashan; Ada Yonath
Journal:  Sci Rep       Date:  2016-11-16       Impact factor: 4.379

9.  Ladderpath Approach: How Tinkering and Reuse Increase Complexity and Information.

Authors:  Yu Liu; Zengru Di; Philip Gerlee
Journal:  Entropy (Basel)       Date:  2022-08-05       Impact factor: 2.738

  9 in total

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