Literature DB >> 19087935

eScience for molecular-scale simulations and the eMinerals project.

E K H Salje1, E Artacho, K F Austen, R P Bruin, M Calleja, H F Chappell, G-T Chiang, M T Dove, I Frame, A L Goodwin, K Kleese van Dam, A Marmier, S C Parker, J M Pruneda, I T Todorov, K Trachenko, R P Tyer, A M Walker, T O H White.   

Abstract

We review the work carried out within the eMinerals project to develop eScience solutions that facilitate a new generation of molecular-scale simulation work. Technological developments include integration of compute and data systems, developing of collaborative frameworks and new researcher-friendly tools for grid job submission, XML data representation, information delivery, metadata harvesting and metadata management. A number of diverse science applications will illustrate how these tools are being used for large parameter-sweep studies, an emerging type of study for which the integration of computing, data and collaboration is essential.

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Year:  2009        PMID: 19087935     DOI: 10.1098/rsta.2008.0195

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  3 in total

1.  Study of interaction energies between the PAMAM dendrimer and nonsteroidal anti-inflammatory drug using a distributed computational strategy and experimental analysis by ESI-MS/MS.

Authors:  Fabián Avila-Salas; Claudia Sandoval; Julio Caballero; Sergio Guiñez-Molinos; Leonardo S Santos; Raúl E Cachau; Fernando D González-Nilo
Journal:  J Phys Chem B       Date:  2012-02-10       Impact factor: 2.991

2.  Implementing a genomic data management system using iRODS in the Wellcome Trust Sanger Institute.

Authors:  Gen-Tao Chiang; Peter Clapham; Guoying Qi; Kevin Sale; Guy Coates
Journal:  BMC Bioinformatics       Date:  2011-09-09       Impact factor: 3.169

3.  From data to analysis: linking NWChem and Avogadro with the syntax and semantics of Chemical Markup Language.

Authors:  Wibe A de Jong; Andrew M Walker; Marcus D Hanwell
Journal:  J Cheminform       Date:  2013-05-24       Impact factor: 5.514

  3 in total

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