Literature DB >> 19085021

The reaction force and the transition region of a reaction.

Alejandro Toro-Labbé1, Soledad Gutiérrez-Oliva, Jane S Murray, Peter Politzer.   

Abstract

The reaction force F(R) and the position-dependent reaction force constant kappaF(R) are defined by F(R)=-deltaV(R)/deltaR and kappa(R)=delta2V(R)/deltaR2, where V(R) is the potential energy of a reacting system along a coordinate R. The minima and maxima of F(R) provide a natural division of the process into several regions. Those in which F(R) is increasing are where the most dramatic changes in electronic properties take place, and where the system goes from activated reactants (at the force minimum) to activated products (at the force maximum). Kappa(R) is negative throughout such a region. We summarize evidence supporting the idea that a reaction should be viewed as going through a transition region rather than through a single point transition state. A similar conclusion has come out of transition state spectroscopy. We describe this region as a chemically-active, or electronically-intensive, stage of the reaction, while the ones that precede and follow it are structurally-intensive. Finally, we briefly address the time dependence of the reaction force and the reaction force constant.

Mesh:

Year:  2008        PMID: 19085021     DOI: 10.1007/s00894-008-0431-8

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  7 in total

1.  Analysis of two intramolecular proton transfer processes in terms of the reaction force.

Authors:  Alejandro Toro-Labbé; Soledad Gutierrez-Oliva; Monica C Concha; Jane S Murray; Peter Politzer
Journal:  J Chem Phys       Date:  2004-09-08       Impact factor: 3.488

2.  Observation of the transition state HD2++ in collisions, H

Authors: 
Journal:  Phys Rev Lett       Date:  1987-11-30       Impact factor: 9.161

3.  Analysis of the reaction force for a gas phase S(N)2 process: CH3Cl + H2O --> CH3OH + HCl.

Authors:  Peter Politzer; Jaroslav V Burda; Monica C Concha; Pat Lane; Jane S Murray
Journal:  J Phys Chem A       Date:  2006-01-19       Impact factor: 2.781

4.  Reaction force decomposition of activation barriers to elucidate solvent effects.

Authors:  Jaroslav V Burda; Alejandro Toro-Labbé; Soledad Gutiérrez-Oliva; Jane S Murray; Peter Politzer
Journal:  J Phys Chem A       Date:  2007-03-14       Impact factor: 2.781

5.  The role of reaction force and chemical potential in characterizing the mechanism of double proton transfer in the adenine-uracil complex.

Authors:  Bárbara Herrera; Alejandro Toro-Labbé
Journal:  J Phys Chem A       Date:  2007-06-13       Impact factor: 2.781

6.  On the mechanism of hydrogen transfer in the HSCH(O) <--> (S)CHOH and HSNO <--> SNOH reactions.

Authors:  Soledad Gutiérrez-Oliva; Bárbara Herrera; Alejandro Toro-Labbé; Henry Chermette
Journal:  J Phys Chem A       Date:  2005-03-03       Impact factor: 2.781

7.  Reaction force analysis of the effect of Mg(II) on the 1,3 intramolecular hydrogen transfer in thymine.

Authors:  Elizabeth Rincón; Pablo Jaque; Alejandro Toro-Labbé
Journal:  J Phys Chem A       Date:  2006-08-03       Impact factor: 2.781

  7 in total
  19 in total

1.  Fine structure in the transition region: reaction force analyses of water-assisted proton transfers.

Authors:  Diana Yepes; Jane S Murray; Juan C Santos; Alejandro Toro-Labbé; Peter Politzer; Pablo Jaque
Journal:  J Mol Model       Date:  2012-06-26       Impact factor: 1.810

2.  Computational design of a lipase for catalysis of the Diels-Alder reaction.

Authors:  Mats Linder; Anders Hermansson; John Liebeschuetz; Tore Brinck
Journal:  J Mol Model       Date:  2010-06-24       Impact factor: 1.810

3.  Applications of the ETS-NOCV method in descriptions of chemical reactions.

Authors:  Mariusz Paweł Mitoraj; Monika Parafiniuk; Monika Srebro; Michał Handzlik; Agnieszka Buczek; Artur Michalak
Journal:  J Mol Model       Date:  2011-03-29       Impact factor: 1.810

4.  Computational design of a Diels-Alderase from a thermophilic esterase: the importance of dynamics.

Authors:  Mats Linder; Adam Johannes Johansson; Tjelvar S G Olsson; John Liebeschuetz; Tore Brinck
Journal:  J Comput Aided Mol Des       Date:  2012-09-16       Impact factor: 3.686

5.  Perspectives on the reaction force constant.

Authors:  Peter Politzer; Jane S Murray; Pablo Jaque
Journal:  J Mol Model       Date:  2013-01-05       Impact factor: 1.810

6.  The mechanism of Menshutkin reaction in gas and solvent phases from the perspective of reaction electronic flux.

Authors:  Santanab Giri; Ricardo Inostroza-Rivera; Bárbara Herrera; Alvaro S Núñez; Fernando Lund; Alejandro Toro-Labbé
Journal:  J Mol Model       Date:  2014-08-19       Impact factor: 1.810

7.  Computational study of vicarious nucleophilic substitution reactions.

Authors:  Lorena Meneses; Shirley Morocho; Alejandra Castellanos; Sebastián Cuesta
Journal:  J Mol Model       Date:  2017-10-02       Impact factor: 1.810

8.  An extension of the Marcus equation: the Marcus potential energy function.

Authors:  Soledad Gutiérrez-Oliva; Bárbara Herrera; Alejandro Toro-Labbé
Journal:  J Mol Model       Date:  2018-03-24       Impact factor: 1.810

9.  Understanding the thermal [1s,5s] hydrogen shift isomerization of ocimene.

Authors:  Eduardo Chamorro; Pablo Ruiz; Jairo Quijano; Diana Luna; Laura Restrepo; Sandra Zuluaga; Mario Duque-Noreña
Journal:  J Mol Model       Date:  2014-08-06       Impact factor: 1.810

10.  DPT tautomerization of the long A∙A Watson-Crick base pair formed by the amino and imino tautomers of adenine: combined QM and QTAIM investigation.

Authors:  Ol'ha O Brovarets'; Roman O Zhurakivsky; Dmytro M Hovorun
Journal:  J Mol Model       Date:  2013-05-29       Impact factor: 1.810

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