Literature DB >> 19083805

Fishing for ancient DNA.

Cecilia Anderung1, Per Persson, Abigail Bouwman, Rengert Elburg, Anders Götherström.   

Abstract

The major problems concerning ancient DNA studies are related to the amount of extractable DNA and the precautions needed to avoid contamination. From the very first step of the analyses, the DNA extraction, these problems must be confronted. There are several extraction methods available for DNA in ancient tissue; several of them are complicated and time consuming, and none of the methods have reached an acceptance level such that they are routinely used on a widespread basis. Here we investigate the efficiency of two methods, one based on magnetic separation of the targeted molecules, and one based on silica binding. The efficiency rate of these two on the material studied seems to be identical. The silica binding method has the benefit of relative simplicity, but the magnetic separation technique also has advantages. For example, it is possible to reuse the extract several times for different loci, and it is possible to concentrate all extracted DNA from one locus into one PCR.

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Year:  2007        PMID: 19083805     DOI: 10.1016/j.fsigen.2007.09.004

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  9 in total

1.  Models and implementation for relationship problems with dropout.

Authors:  Guro Dørum; Daniel Kling; Carlos Baeza-Richer; Manuel García-Magariños; Solve Sæbø; Stijn Desmyter; Thore Egeland
Journal:  Int J Legal Med       Date:  2014-08-10       Impact factor: 2.686

2.  Molecular genetic identification of skeletal remains from the Second World War Konfin I mass grave in Slovenia.

Authors:  Irena Zupanic Pajnic; Barbara Gornjak Pogorelc; Joze Balazic
Journal:  Int J Legal Med       Date:  2010-03-10       Impact factor: 2.686

3.  Highly efficient nuclear DNA typing of the World War II skeletal remains using three new autosomal short tandem repeat amplification kits with the extended European Standard Set of loci.

Authors:  Irena Zupanic Pajnic; Barbara Gornjak Pogorelc; Joze Balazic; Tomaz Zupanc; Borut Stefanic
Journal:  Croat Med J       Date:  2012-02-15       Impact factor: 1.351

4.  Next Generation Sequencing of Ancient DNA: Requirements, Strategies and Perspectives.

Authors:  Michael Knapp; Michael Hofreiter
Journal:  Genes (Basel)       Date:  2010-07-28       Impact factor: 4.096

5.  Development and Optimization of a Silica Column-Based Extraction Protocol for Ancient DNA.

Authors:  Marianne Dehasque; Patrícia Pečnerová; Vendela Kempe Lagerholm; Erik Ersmark; Gleb K Danilov; Peter Mortensen; Sergey Vartanyan; Love Dalén
Journal:  Genes (Basel)       Date:  2022-04-13       Impact factor: 4.141

6.  DNA capture and next-generation sequencing can recover whole mitochondrial genomes from highly degraded samples for human identification.

Authors:  Jennifer E L Templeton; Paul M Brotherton; Bastien Llamas; Julien Soubrier; Wolfgang Haak; Alan Cooper; Jeremy J Austin
Journal:  Investig Genet       Date:  2013-12-02

7.  Preamplification procedure for the analysis of ancient DNA samples.

Authors:  Stefania Del Gaudio; Alessandra Cirillo; Giovanni Di Bernardo; Umberto Galderisi; Theodoros Thanassoulas; Theodoros Pitsios; Marilena Cipollaro
Journal:  ScientificWorldJournal       Date:  2013-09-25

8.  Simultaneous Whole Mitochondrial Genome Sequencing with Short Overlapping Amplicons Suitable for Degraded DNA Using the Ion Torrent Personal Genome Machine.

Authors:  Lakshmi Chaitanya; Arwin Ralf; Mannis van Oven; Tomasz Kupiec; Joseph Chang; Robert Lagacé; Manfred Kayser
Journal:  Hum Mutat       Date:  2015-10-08       Impact factor: 4.878

9.  3D-Printed Modular Microfluidic Device Enabling Preconcentrating Bacteria and Purifying Bacterial DNA in Blood for Improving the Sensitivity of Molecular Diagnostics.

Authors:  Abdurhaman Teyib Abafogi; Jaewon Kim; Jinyeop Lee; Merem Omer Mohammed; Danny van Noort; Sungsu Park
Journal:  Sensors (Basel)       Date:  2020-02-21       Impact factor: 3.576

  9 in total

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