Literature DB >> 19083735

EMPOP--a forensic mtDNA database.

Walther Parson1, Arne Dür.   

Abstract

Mitochondrial DNA databases stand as the basis for frequency estimations of mtDNA sequences that became relevant in a case. The establishment of mtDNA databases sounds trivial; however, it has been shown in the past that this undertaking is prone to error for several reasons, particularly human error. We have established a concept for mtDNA data generation, analysis, transfer and quality control that meets forensic standards. Due to the complexity of mtDNA population data tables it is often difficult if not impossible to detect errors, especially for the untrained eye. We developed software based on quasi-median network analysis that visualizes mtDNA data tables and thus signposts sequencing, interpretation and transcription errors. The mtDNA data (N=5173; release 1) are stored and made publicly available via the Internet in the form of the EDNAP mtDNA Population Database, short EMPOP. This website also facilitates quasi-median network analysis and provides results that can be used to check the quality of mtDNA sequence data. EMPOP has been launched on 16 October 2006 and is since then available at http://www.empop.org.

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Year:  2007        PMID: 19083735     DOI: 10.1016/j.fsigen.2007.01.018

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  81 in total

1.  Publication of population data of linearly inherited DNA markers in the International Journal of Legal Medicine.

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Journal:  Int J Legal Med       Date:  2010-07-22       Impact factor: 2.686

2.  Genetic portrait of Lisboa immigrant population from Cabo Verde with mitochondrial DNA analysis.

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Journal:  J Genet       Date:  2015-09       Impact factor: 1.166

3.  Whole mitochondrial genome genetic diversity in an Estonian population sample.

Authors:  Monika Stoljarova; Jonathan L King; Maiko Takahashi; Anu Aaspõllu; Bruce Budowle
Journal:  Int J Legal Med       Date:  2015-08-20       Impact factor: 2.686

4.  Mitochondrial DNA analysis of Swedish population samples.

Authors:  Maria Lembring; Mannis van Oven; Maria Montelius; Marie Allen
Journal:  Int J Legal Med       Date:  2013-11       Impact factor: 2.686

5.  Amerindian mitochondrial DNA haplogroups predominate in the population of Argentina: towards a first nationwide forensic mitochondrial DNA sequence database.

Authors:  Maria Cecilia Bobillo; Bettina Zimmermann; Andrea Sala; Gabriela Huber; Alexander Röck; Hans-Jürgen Bandelt; Daniel Corach; Walther Parson
Journal:  Int J Legal Med       Date:  2009-08-13       Impact factor: 2.686

6.  'Mitominis': multiplex PCR analysis of reduced size amplicons for compound sequence analysis of the entire mtDNA control region in highly degraded samples.

Authors:  Cordula Eichmann; Walther Parson
Journal:  Int J Legal Med       Date:  2008-03-28       Impact factor: 2.686

7.  Homogeneity in mitochondrial DNA control region sequences in Swedish subpopulations.

Authors:  Andreas O Tillmar; Michael D Coble; Thomas Wallerström; Gunilla Holmlund
Journal:  Int J Legal Med       Date:  2009-07-10       Impact factor: 2.686

8.  mtDNAmanager: a Web-based tool for the management and quality analysis of mitochondrial DNA control-region sequences.

Authors:  Hwan Young Lee; Injee Song; Eunho Ha; Sung-Bae Cho; Woo Ick Yang; Kyoung-Jin Shin
Journal:  BMC Bioinformatics       Date:  2008-11-17       Impact factor: 3.169

9.  Human evolution in Siberia: from frozen bodies to ancient DNA.

Authors:  Eric Crubézy; Sylvain Amory; Christine Keyser; Caroline Bouakaze; Martin Bodner; Morgane Gibert; Alexander Röck; Walther Parson; Anatoly Alexeev; Bertrand Ludes
Journal:  BMC Evol Biol       Date:  2010-01-25       Impact factor: 3.260

10.  A new deep branch of eurasian mtDNA macrohaplogroup M reveals additional complexity regarding the settlement of Madagascar.

Authors:  François-X Ricaut; Harilanto Razafindrazaka; Murray P Cox; Jean-M Dugoujon; Evelyne Guitard; Clement Sambo; Maru Mormina; Marta Mirazon-Lahr; Bertrand Ludes; Eric Crubézy
Journal:  BMC Genomics       Date:  2009-12-14       Impact factor: 3.969

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