Literature DB >> 19081626

Cluster analysis of genomic ETV6-RUNX1 (TEL-AML1) fusion sites in childhood acute lymphoblastic leukemia.

H von Goessel1, U Jacobs, S Semper, M Krumbholz, T Langer, T Keller, A Schrauder, V H J van der Velden, J J M van Dongen, J Harbott, E R Panzer-Grümayer, M Schrappe, W Rascher, M Metzler.   

Abstract

Fusion between ETV6 and RUNX1 defines the largest genetic subgroup in childhood ALL. The genomic fusion site, unique to individual patients and specific for the malignant clone, represents an ideal molecular marker for quantification of minimal residual disease. Sequencing of DNA breakpoints has been difficult due to the extended size of the respective breakpoint cluster regions. We therefore evaluated a specially designed multiplex long-range PCR assay in 65 diagnostic bone marrow samples for its suitability in routine use. Resulting fusion sites and breakpoints derived from previous studies were subject to cluster analysis to identify potential sequence motifs involved in translocation initiation.

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Year:  2008        PMID: 19081626     DOI: 10.1016/j.leukres.2008.11.001

Source DB:  PubMed          Journal:  Leuk Res        ISSN: 0145-2126            Impact factor:   3.156


  6 in total

Review 1.  The Prenatal Origin of Childhood Leukemia: Potential Applications for Epidemiology and Newborn Screening.

Authors:  Erin L Marcotte; Logan G Spector; Daniela P Mendes-de-Almeida; Heather H Nelson
Journal:  Front Pediatr       Date:  2021-04-23       Impact factor: 3.418

2.  Genomic inverse PCR for exploration of ligated breakpoints (GIPFEL), a new method to detect translocations in leukemia.

Authors:  Elisa Fueller; Daniel Schaefer; Ute Fischer; Pina F I Krell; Martin Stanulla; Arndt Borkhardt; Robert K Slany
Journal:  PLoS One       Date:  2014-08-19       Impact factor: 3.240

3.  Molecular Composition of Genomic TMPRSS2-ERG Rearrangements in Prostate Cancer.

Authors:  Manuela Krumbholz; Abbas Agaimy; Robert Stoehr; Maximilian Burger; Sven Wach; Helge Taubert; Bernd Wullich; Arndt Hartmann; Markus Metzler
Journal:  Dis Markers       Date:  2019-12-12       Impact factor: 3.434

4.  Genomic EWS-FLI1 fusion sequences in Ewing sarcoma resemble breakpoint characteristics of immature lymphoid malignancies.

Authors:  Manfred Berger; Uta Dirksen; Andreas Braeuninger; Gabriele Koehler; Heribert Juergens; Manuela Krumbholz; Markus Metzler
Journal:  PLoS One       Date:  2013-02-18       Impact factor: 3.240

5.  Neonatal infection with species C adenoviruses confirmed in viable cord blood lymphocytes.

Authors:  David A Ornelles; Linda R Gooding; C Garnett-Benson
Journal:  PLoS One       Date:  2015-03-12       Impact factor: 3.240

6.  Characterization and diagnostic application of genomic NPM-ALK fusion sequences in anaplastic large-cell lymphoma.

Authors:  Manuela Krumbholz; Wilhelm Woessmann; Jakob Zierk; David Seniuk; Paolo Ceppi; Martin Zimmermann; Vijay Kumar Singh; Markus Metzler; Christine Damm-Welk
Journal:  Oncotarget       Date:  2018-05-29
  6 in total

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