Literature DB >> 19081373

High-potency olfactory receptor agonists discovered by virtual high-throughput screening: molecular probes for receptor structure and olfactory function.

Nicolas Triballeau1, Eric Van Name, Guillaume Laslier, Diana Cai, Guillaume Paillard, Peter W Sorensen, Rémy Hoffmann, Hugues-Olivier Bertrand, John Ngai, Francine C Acher.   

Abstract

The detection of diverse chemical structures by the vertebrate olfactory system is accomplished by the recognition of odorous ligands by their cognate receptors. In the present study, we used computational screening to discover novel high-affinity agonists of an olfactory G protein-coupled receptor that recognizes amino acid ligands. Functional testing of the top candidates validated several agonists with potencies higher than any of the receptor's known natural ligands. Computational modeling revealed molecular interactions involved in ligand binding and further highlighted interactions that have been conserved in evolutionarily divergent amino acid receptors. Significantly, the top compounds display robust activities as odorants in vivo and include a natural product that may be used to signal the presence of bacteria in the environment. Our virtual screening approach should be applicable to the identification of new bioactive molecules for probing the structure of chemosensory receptors and the function of chemosensory systems in vivo.

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Year:  2008        PMID: 19081373      PMCID: PMC2652502          DOI: 10.1016/j.neuron.2008.11.014

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   17.173


  27 in total

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Authors:  D J Speca; D M Lin; P W Sorensen; E Y Isacoff; J Ngai; A H Dittman
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Review 2.  Evolution, structure, and activation mechanism of family 3/C G-protein-coupled receptors.

Authors:  Jean-Philippe Pin; Thierry Galvez; Laurent Prézeau
Journal:  Pharmacol Ther       Date:  2003-06       Impact factor: 12.310

3.  Closure of the Venus flytrap module of mGlu8 receptor and the activation process: Insights from mutations converting antagonists into agonists.

Authors:  Anne-Sophie Bessis; Philippe Rondard; Florence Gaven; Isabelle Brabet; Nicolas Triballeau; Laurent Prezeau; Francine Acher; Jean-Philippe Pin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-31       Impact factor: 11.205

Review 4.  Genes and ligands for odorant, vomeronasal and taste receptors.

Authors:  Peter Mombaerts
Journal:  Nat Rev Neurosci       Date:  2004-04       Impact factor: 34.870

5.  Molecular determinants of ligand selectivity in a vertebrate odorant receptor.

Authors:  Percy Luu; Francine Acher; Hugues-Olivier Bertrand; Jinhong Fan; John Ngai
Journal:  J Neurosci       Date:  2004-11-10       Impact factor: 6.167

6.  Virtual screening workflow development guided by the "receiver operating characteristic" curve approach. Application to high-throughput docking on metabotropic glutamate receptor subtype 4.

Authors:  Nicolas Triballeau; Francine Acher; Isabelle Brabet; Jean-Philippe Pin; Hugues-Olivier Bertrand
Journal:  J Med Chem       Date:  2005-04-07       Impact factor: 7.446

7.  Comparative genomic analysis identifies an evolutionary shift of vomeronasal receptor gene repertoires in the vertebrate transition from water to land.

Authors:  Peng Shi; Jianzhi Zhang
Journal:  Genome Res       Date:  2007-01-08       Impact factor: 9.043

8.  Structural basis for a broad but selective ligand spectrum of a mouse olfactory receptor: mapping the odorant-binding site.

Authors:  Sayako Katada; Takatsugu Hirokawa; Yuki Oka; Makiko Suwa; Kazushige Touhara
Journal:  J Neurosci       Date:  2005-02-16       Impact factor: 6.167

9.  Composition and evolution of the V2r vomeronasal receptor gene repertoire in mice and rats.

Authors:  Hui Yang; Peng Shi; Ya-Ping Zhang; Jianzhi Zhang
Journal:  Genomics       Date:  2005-09       Impact factor: 5.736

10.  Occurrence and degradation of peptidoglycan in aquatic environments.

Authors:  Niels O G Jørgensen; Ramunas Stepanaukas; Anne-Grethe U Pedersen; Michael Hansen; Ole Nybroe
Journal:  FEMS Microbiol Ecol       Date:  2003-12-01       Impact factor: 4.194

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  7 in total

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2.  Small molecule BDNF mimetics activate TrkB signaling and prevent neuronal degeneration in rodents.

Authors:  Stephen M Massa; Tao Yang; Youmei Xie; Jian Shi; Mehmet Bilgen; Jeffrey N Joyce; Dean Nehama; Jayakumar Rajadas; Frank M Longo
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3.  Family structure and phylogenetic analysis of odorant receptor genes in the large yellow croaker (Larimichthys crocea).

Authors:  Yingsong Zhou; Xiaojun Yan; Shanliang Xu; Peng Zhu; Xianxing He; Jianxin Liu
Journal:  BMC Evol Biol       Date:  2011-08-11       Impact factor: 3.260

Review 4.  Computational methods in drug discovery.

Authors:  Sumudu P Leelananda; Steffen Lindert
Journal:  Beilstein J Org Chem       Date:  2016-12-12       Impact factor: 2.883

5.  Expanding the olfactory code by in silico decoding of odor-receptor chemical space.

Authors:  Sean Michael Boyle; Shane McInally; Anandasankar Ray
Journal:  Elife       Date:  2013-10-01       Impact factor: 8.140

6.  Activation of olfactory receptors on mouse pulmonary macrophages promotes monocyte chemotactic protein-1 production.

Authors:  Jing Jing Li; Hock L Tay; Maximilian Plank; Ama-Tawiah Essilfie; Philip M Hansbro; Paul S Foster; Ming Yang
Journal:  PLoS One       Date:  2013-11-21       Impact factor: 3.240

7.  Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like molecules.

Authors:  Alice Grison; Silvia Zucchelli; Alice Urzì; Ilaria Zamparo; Dejan Lazarevic; Giovanni Pascarella; Paola Roncaglia; Alejandro Giorgetti; Paula Garcia-Esparcia; Christina Vlachouli; Roberto Simone; Francesca Persichetti; Alistair R R Forrest; Yoshihide Hayashizaki; Paolo Carloni; Isidro Ferrer; Claudia Lodovichi; Charles Plessy; Piero Carninci; Stefano Gustincich
Journal:  BMC Genomics       Date:  2014-08-27       Impact factor: 3.969

  7 in total

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