Literature DB >> 19081052

Determination of protein structures in the solid state from NMR chemical shifts.

Paul Robustelli1, Andrea Cavalli, Michele Vendruscolo.   

Abstract

Solid-state NMR spectroscopy does not require proteins to form crystalline or soluble samples and can thus be applied under a variety of conditions, including precipitates, gels, and microcrystals. It has recently been shown that NMR chemical shifts can be used to determine the structures of the native states of proteins in solution. By considering the cases of two proteins, GB1 and SH3, we provide an initial demonstration here that this type of approach can be extended to the use of solid-state NMR chemical shifts to obtain protein structures in the solid state without the need for measuring interatomic distances.

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Year:  2008        PMID: 19081052     DOI: 10.1016/j.str.2008.10.016

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  14 in total

1.  Amyloid-like fibrils from a domain-swapping protein feature a parallel, in-register conformation without native-like interactions.

Authors:  Jun Li; Cody L Hoop; Ravindra Kodali; V N Sivanandam; Patrick C A van der Wel
Journal:  J Biol Chem       Date:  2011-06-28       Impact factor: 5.157

2.  Structure-based prediction of methyl chemical shifts in proteins.

Authors:  Aleksandr B Sahakyan; Wim F Vranken; Andrea Cavalli; Michele Vendruscolo
Journal:  J Biomol NMR       Date:  2011-07-12       Impact factor: 2.835

3.  Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts.

Authors:  Wouter Boomsma; Pengfei Tian; Jes Frellsen; Jesper Ferkinghoff-Borg; Thomas Hamelryck; Kresten Lindorff-Larsen; Michele Vendruscolo
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-05       Impact factor: 11.205

Review 4.  Chemical shift-based methods in NMR structure determination.

Authors:  Santrupti Nerli; Andrew C McShan; Nikolaos G Sgourakis
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2018-03-11       Impact factor: 9.795

Review 5.  Chemical shift prediction for protein structure calculation and quality assessment using an optimally parameterized force field.

Authors:  Jakob T Nielsen; Hamid R Eghbalnia; Niels Chr Nielsen
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2011-05-23       Impact factor: 9.795

6.  High-resolution MAS NMR analysis of PI3-SH3 amyloid fibrils: backbone conformation and implications for protofilament assembly and structure .

Authors:  Marvin J Bayro; Thorsten Maly; Neil R Birkett; Cait E Macphee; Christopher M Dobson; Robert G Griffin
Journal:  Biochemistry       Date:  2010-09-07       Impact factor: 3.162

7.  Synergy of NMR, computation, and X-ray crystallography for structural biology.

Authors:  Blair R Szymczyna; Rebecca E Taurog; Mark J Young; Jamie C Snyder; John E Johnson; James R Williamson
Journal:  Structure       Date:  2009-04-15       Impact factor: 5.006

8.  Quantum chemical calculations of amide-15N chemical shift anisotropy tensors for a membrane-bound cytochrome-b5.

Authors:  Manoj Kumar Pandey; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2013-01-10       Impact factor: 2.991

9.  Prediction of Xaa-Pro peptide bond conformation from sequence and chemical shifts.

Authors:  Yang Shen; Ad Bax
Journal:  J Biomol NMR       Date:  2009-12-30       Impact factor: 2.835

10.  Predicting continuous local structure and the effect of its substitution for secondary structure in fragment-free protein structure prediction.

Authors:  Eshel Faraggi; Yuedong Yang; Shesheng Zhang; Yaoqi Zhou
Journal:  Structure       Date:  2009-11-11       Impact factor: 5.006

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