Literature DB >> 19074607

Molecular determinants of the regioselectivity of toluene/o-xylene monooxygenase from Pseudomonas sp. strain OX1.

Eugenio Notomista1, Valeria Cafaro, Giuseppe Bozza, Alberto Di Donato.   

Abstract

Bacterial multicomponent monooxygenases (BMMs) are a heterogeneous family of di-iron monooxygenases which share the very interesting ability to hydroxylate aliphatic and/or aromatic hydrocarbons. Each BMM possesses defined substrate specificity and regioselectivity which match the metabolic requirements of the strain from which it has been isolated. Pseudomonas sp. strain OX1, a strain able to metabolize o-, m-, and p-cresols, produces the BMM toluene/o-xylene monooxygenase (ToMO), which converts toluene to a mixture of o-, m-, and p-cresol isomers. In order to investigate the molecular determinants of ToMO regioselectivity, we prepared and characterized 15 single-mutant and 3 double-mutant forms of the ToMO active site pocket. Using the Monte Carlo approach, we prepared models of ToMO-substrate and ToMO-reaction intermediate complexes which allowed us to provide a molecular explanation for the regioselectivities of wild-type and mutant ToMO enzymes. Furthermore, using binding energy values calculated by energy analyses of the complexes and a simple mathematical model of the hydroxylation reaction, we were able to predict quantitatively the regioselectivities of the majority of the variant proteins with good accuracy. The results show not only that the fine-tuning of ToMO regioselectivity can be achieved through a careful alteration of the shape of the active site but also that the effects of the mutations on regioselectivity can be quantitatively predicted a priori.

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Year:  2008        PMID: 19074607      PMCID: PMC2632146          DOI: 10.1128/AEM.01951-08

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  38 in total

1.  Combined participation of hydroxylase active site residues and effector protein binding in a para to ortho modulation of toluene 4-monooxygenase regiospecificity.

Authors:  Kevin H Mitchell; Joey M Studts; Brian G Fox
Journal:  Biochemistry       Date:  2002-03-05       Impact factor: 3.162

2.  Evolution of bacterial and archaeal multicomponent monooxygenases.

Authors:  Eugenio Notomista; Armin Lahm; Alberto Di Donato; Anna Tramontano
Journal:  J Mol Evol       Date:  2003-04       Impact factor: 2.395

3.  Expression and purification of the recombinant subunits of toluene/o-xylene monooxygenase and reconstitution of the active complex.

Authors:  Valeria Cafaro; Roberta Scognamiglio; Ambra Viggiani; Viviana Izzo; Irene Passaro; Eugenio Notomista; Fabrizio Dal Piaz; Angela Amoresano; Annarita Casbarra; Piero Pucci; Alberto Di Donato
Journal:  Eur J Biochem       Date:  2002-11

4.  Saturation mutagenesis of toluene ortho-monooxygenase of Burkholderia cepacia G4 for Enhanced 1-naphthol synthesis and chloroform degradation.

Authors:  Lingyun Rui; Young Man Kwon; Ayelet Fishman; Kenneth F Reardon; Thomas K Wood
Journal:  Appl Environ Microbiol       Date:  2004-06       Impact factor: 4.792

5.  Phenol hydroxylase and toluene/o-xylene monooxygenase from Pseudomonas stutzeri OX1: interplay between two enzymes.

Authors:  Valeria Cafaro; Viviana Izzo; Roberta Scognamiglio; Eugenio Notomista; Paola Capasso; Annarita Casbarra; Piero Pucci; Alberto Di Donato
Journal:  Appl Environ Microbiol       Date:  2004-04       Impact factor: 4.792

Review 6.  Molecular biology and regulation of methane monooxygenase.

Authors:  J C Murrell; B Gilbert; I R McDonald
Journal:  Arch Microbiol       Date:  2000 May-Jun       Impact factor: 2.552

7.  Reaction intermediate analogues for mandelate racemase: interaction between Asn 197 and the alpha-hydroxyl of the substrate promotes catalysis.

Authors:  M St Maurice; S L Bearne
Journal:  Biochemistry       Date:  2000-11-07       Impact factor: 3.162

8.  Insight into the mechanism of aromatic hydroxylation by toluene 4-monooxygenase by use of specifically deuterated toluene and p-xylene.

Authors:  Kevin H Mitchell; Corina E Rogge; Todd Gierahn; Brian G Fox
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-14       Impact factor: 11.205

Review 9.  Evolution of the soluble diiron monooxygenases.

Authors:  Joseph G Leahy; Patricia J Batchelor; Suzanne M Morcomb
Journal:  FEMS Microbiol Rev       Date:  2003-10       Impact factor: 16.408

10.  The pentacovalent phosphorus intermediate of a phosphoryl transfer reaction.

Authors:  Sushmita D Lahiri; Guofeng Zhang; Debra Dunaway-Mariano; Karen N Allen
Journal:  Science       Date:  2003-03-13       Impact factor: 47.728

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  8 in total

1.  Insights into the different dioxygen activation pathways of methane and toluene monooxygenase hydroxylases.

Authors:  Arteum D Bochevarov; Jianing Li; Woon Ju Song; Richard A Friesner; Stephen J Lippard
Journal:  J Am Chem Soc       Date:  2011-04-25       Impact factor: 15.419

2.  Tuning the specificity of the recombinant multicomponent toluene o-xylene monooxygenase from Pseudomonas sp. strain OX1 for the biosynthesis of tyrosol from 2-phenylethanol.

Authors:  Eugenio Notomista; Roberta Scognamiglio; Luca Troncone; Giuliana Donadio; Alessandro Pezzella; Alberto Di Donato; Viviana Izzo
Journal:  Appl Environ Microbiol       Date:  2011-06-10       Impact factor: 4.792

3.  Crystallization and preliminary X-ray analysis of PaaAC, the main component of the hydroxylase of the Escherichia coli phenylacetyl-coenzyme A oxygenase complex.

Authors:  Andrey M Grishin; Eunice Ajamian; Linhua Zhang; Miroslaw Cygler
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-08-26

4.  Structural and functional studies of the Escherichia coli phenylacetyl-CoA monooxygenase complex.

Authors:  Andrey M Grishin; Eunice Ajamian; Limei Tao; Linhua Zhang; Robert Menard; Miroslaw Cygler
Journal:  J Biol Chem       Date:  2011-01-19       Impact factor: 5.157

Review 5.  Engineering non-heme mono- and dioxygenases for biocatalysis.

Authors:  Adi Dror; Ayelet Fishman
Journal:  Comput Struct Biotechnol J       Date:  2012-10-23       Impact factor: 7.271

6.  The Toluene o-Xylene Monooxygenase Enzymatic Activity for the Biosynthesis of Aromatic Antioxidants.

Authors:  Giuliana Donadio; Carmen Sarcinelli; Elio Pizzo; Eugenio Notomista; Alessandro Pezzella; Carlo Di Cristo; Federica De Lise; Alberto Di Donato; Viviana Izzo
Journal:  PLoS One       Date:  2015-04-27       Impact factor: 3.240

Review 7.  Gates of enzymes.

Authors:  Artur Gora; Jan Brezovsky; Jiri Damborsky
Journal:  Chem Rev       Date:  2013-04-25       Impact factor: 60.622

8.  Denatured lysozyme-coated carbon nanotubes: a versatile biohybrid material.

Authors:  Marialuisa Siepi; Giuliana Donadio; Principia Dardano; Luca De Stefano; Daria Maria Monti; Eugenio Notomista
Journal:  Sci Rep       Date:  2019-11-12       Impact factor: 4.379

  8 in total

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