Literature DB >> 19073592

Better bioinformatics through usability analysis.

Davide Bolchini1, Anthony Finkelstein, Vito Perrone, Sylvia Nagl.   

Abstract

MOTIVATION: Improving the usability of bioinformatics resources enables researchers to find, interact with, share, compare and manipulate important information more effectively and efficiently. It thus enables researchers to gain improved insights into biological processes with the potential, ultimately, of yielding new scientific results. Usability 'barriers' can pose significant obstacles to a satisfactory user experience and force researchers to spend unnecessary time and effort to complete their tasks. The number of online biological databases available is growing and there is an expanding community of diverse users. In this context there is an increasing need to ensure the highest standards of usability.
RESULTS: Using 'state-of-the-art' usability evaluation methods, we have identified and characterized a sample of usability issues potentially relevant to web bioinformatics resources, in general. These specifically concern the design of the navigation and search mechanisms available to the user. The usability issues we have discovered in our substantial case studies are undermining the ability of users to find the information they need in their daily research activities. In addition to characterizing these issues, specific recommendations for improvements are proposed leveraging proven practices from web and usability engineering. The methods and approach we exemplify can be readily adopted by the developers of bioinformatics resources.

Mesh:

Year:  2008        PMID: 19073592     DOI: 10.1093/bioinformatics/btn633

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  21 in total

1.  A call for bioimaging software usability.

Authors:  Anne E Carpenter; Lee Kamentsky; Kevin W Eliceiri
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

2.  Enhancing the informatics evaluation toolkit with remote usability testing.

Authors:  Brian E Dixon
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

3.  Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop.

Authors:  Kathleen M Jagodnik; Simon Koplev; Sherry L Jenkins; Lucila Ohno-Machado; Benedict Paten; Stephan C Schurer; Michel Dumontier; Ruben Verborgh; Alex Bui; Peipei Ping; Neil J McKenna; Ravi Madduri; Ajay Pillai; Avi Ma'ayan
Journal:  J Biomed Inform       Date:  2017-05-10       Impact factor: 6.317

Review 4.  Towards public health decision support: a systematic review of bidirectional communication approaches.

Authors:  Brian E Dixon; Roland E Gamache; Shaun J Grannis
Journal:  J Am Med Inform Assoc       Date:  2013-03-06       Impact factor: 4.497

Review 5.  Data integration for dynamic and sustainable systems biology resources: challenges and lessons learned.

Authors:  Daniel E Sullivan; Joseph L Gabbard; Maulik Shukla; Bruno Sobral
Journal:  Chem Biodivers       Date:  2010-05       Impact factor: 2.408

Review 6.  Issues in bioinformatics benchmarking: the case study of multiple sequence alignment.

Authors:  Mohamed Radhouene Aniba; Olivier Poch; Julie D Thompson
Journal:  Nucleic Acids Res       Date:  2010-07-17       Impact factor: 16.971

7.  The annotation and the usage of scientific databases could be improved with public issue tracker software.

Authors:  Giovanni Marco Dall'Olio; Jaume Bertranpetit; Hafid Laayouni
Journal:  Database (Oxford)       Date:  2010-12-23       Impact factor: 3.451

8.  BioCreative III interactive task: an overview.

Authors:  Cecilia N Arighi; Phoebe M Roberts; Shashank Agarwal; Sanmitra Bhattacharya; Gianni Cesareni; Andrew Chatr-Aryamontri; Simon Clematide; Pascale Gaudet; Michelle Gwinn Giglio; Ian Harrow; Eva Huala; Martin Krallinger; Ulf Leser; Donghui Li; Feifan Liu; Zhiyong Lu; Lois J Maltais; Naoaki Okazaki; Livia Perfetto; Fabio Rinaldi; Rune Sætre; David Salgado; Padmini Srinivasan; Philippe E Thomas; Luca Toldo; Lynette Hirschman; Cathy H Wu
Journal:  BMC Bioinformatics       Date:  2011-10-03       Impact factor: 3.169

9.  C²Maps: a network pharmacology database with comprehensive disease-gene-drug connectivity relationships.

Authors:  Hui Huang; Xiaogang Wu; Ragini Pandey; Jiao Li; Guoling Zhao; Sara Ibrahim; Jake Y Chen
Journal:  BMC Genomics       Date:  2012-10-26       Impact factor: 3.969

10.  The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics.

Authors:  Paula de Matos; Jennifer A Cham; Hong Cao; Rafael Alcántara; Francis Rowland; Rodrigo Lopez; Christoph Steinbeck
Journal:  BMC Bioinformatics       Date:  2013-03-20       Impact factor: 3.169

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