Literature DB >> 19072845

Knowledge-guided laboratory evolution of protein thermolability.

Manfred T Reetz1, Pankaj Soni, Layla Fernández.   

Abstract

In rare but nevertheless important cases it is of practical interest to decrease the thermostability of an enzyme, that is, to increase thermolability in a controlled manner. In the present model study, this unconventional goal has been reached by applying directed evolution to the lipase from Pseudomonas aeruginosa (PAL). By utilizing the B-factor iterative test (B-FIT), previously developed to increase the thermostability of enzymes, it was possible to reduce the T(15)(50) value from 71.6 degrees C in the case of wild type (WT-PAL) to 35.6 degrees C (best mutant) without affecting the catalytic profile in terms of substrate acceptance or enantioselectivity at room temperature. Accordingly, saturation mutagenesis was performed at sites in PAL, which on the basis of its X-ray structure, have the lowest B-factors indicative of high rigidity. Focused mutations were introduced which can be expected to decrease rigidity, the ensuing increased flexibility leading to higher thermolability without changing the actual catalytic profile. 2008 Wiley Periodicals, Inc.

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Year:  2009        PMID: 19072845     DOI: 10.1002/bit.22202

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  10 in total

1.  Probing protein stability and proteolytic resistance by loop scanning: a comprehensive mutational analysis.

Authors:  Shoeb Ahmad; Virender Kumar; K Bhanu Ramanand; N Madhusudhana Rao
Journal:  Protein Sci       Date:  2012-02-06       Impact factor: 6.725

Review 2.  Rational and Semirational Protein Design.

Authors:  Ivan V Korendovych
Journal:  Methods Mol Biol       Date:  2018

3.  Determination of ensemble-average pairwise root mean-square deviation from experimental B-factors.

Authors:  Antonija Kuzmanic; Bojan Zagrovic
Journal:  Biophys J       Date:  2010-03-03       Impact factor: 4.033

4.  A multi-factors rational design strategy for enhancing the thermostability of Escherichia coli AppA phytase.

Authors:  Baojin Fei; Hui Xu; Yu Cao; Shuhan Ma; Hongxiu Guo; Tao Song; Dairong Qiao; Yi Cao
Journal:  J Ind Microbiol Biotechnol       Date:  2013-03-14       Impact factor: 3.346

5.  Significantly improving the thermostability of a hyperthermophilic GH10 family xylanase XynAF1 by semi-rational design.

Authors:  Guangqi Li; Xuan Zhou; Zhihong Li; Yunpeng Liu; Dongyang Liu; Youzhi Miao; Qun Wan; Ruifu Zhang
Journal:  Appl Microbiol Biotechnol       Date:  2021-05-20       Impact factor: 4.813

6.  Recombination of Compatible Substitutions by 2GenReP and InSiReP.

Authors:  Haiyang Cui; Mehdi D Davari; Ulrich Schwaneberg
Journal:  Methods Mol Biol       Date:  2022

7.  Structural analysis on mutation residues and interfacial water molecules for human TIM disease understanding.

Authors:  Zhenhua Li; Ying He; Qian Liu; Liang Zhao; Limsoon Wong; Chee Keong Kwoh; Hung Nguyen; Jinyan Li
Journal:  BMC Bioinformatics       Date:  2013-10-22       Impact factor: 3.169

8.  Computer-Assisted Recombination (CompassR) Teaches us How to Recombine Beneficial Substitutions from Directed Evolution Campaigns.

Authors:  Haiyang Cui; Hao Cao; Haiying Cai; Karl-Erich Jaeger; Mehdi D Davari; Ulrich Schwaneberg
Journal:  Chemistry       Date:  2019-12-03       Impact factor: 5.236

9.  Improvement of biocatalysts for industrial and environmental purposes by saturation mutagenesis.

Authors:  Francesca Valetti; Gianfranco Gilardi
Journal:  Biomolecules       Date:  2013-10-08

10.  RankProt: A multi criteria-ranking platform to attain protein thermostabilizing mutations and its in vitro applications - Attribute based prediction method on the principles of Analytical Hierarchical Process.

Authors:  Debamitra Chakravorty; Sanjukta Patra
Journal:  PLoS One       Date:  2018-10-04       Impact factor: 3.240

  10 in total

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