Literature DB >> 19066994

In-silico screening of new potential Bcl-2/Bcl-xl inhibitors as apoptosis modulators.

Anna Maria Almerico1, Marco Tutone, Antonino Lauria.   

Abstract

One of the major problems in the fight against cancer is drug-resistance, which, at a molecular level, can be acquired through mutations able to deactivate apoptosis. In particular, proteins in the Bcl-2 family are central regulators of programmed cell death, and members that inhibit apoptosis, such as Bcl-xl and Bcl-2, are overexpressed in many tumours. The development of new inhibitors of these proteins as potential anticancer therapeutics represents a new frontier. In this work, we carried out an in-silico screening of compounds from a free database of more than 2 million structures (ZINC database), which allowed us to identify 17 sulfonamide derivatives as new potential inhibitors; these are currently undergoing biological evaluation.

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Year:  2008        PMID: 19066994     DOI: 10.1007/s00894-008-0405-x

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  13 in total

1.  Deciphering common failures in molecular docking of ligand-protein complexes.

Authors:  G M Verkhivker; D Bouzida; D K Gehlhaar; P A Rejto; S Arthurs; A B Colson; S T Freer; V Larson; B A Luty; T Marrone; P W Rose
Journal:  J Comput Aided Mol Des       Date:  2000-11       Impact factor: 3.686

Review 2.  Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings.

Authors:  C A Lipinski; F Lombardo; B W Dominy; P J Feeney
Journal:  Adv Drug Deliv Rev       Date:  2001-03-01       Impact factor: 15.470

3.  A general and fast scoring function for protein-ligand interactions: a simplified potential approach.

Authors:  I Muegge; Y C Martin
Journal:  J Med Chem       Date:  1999-03-11       Impact factor: 7.446

4.  LigandFit: a novel method for the shape-directed rapid docking of ligands to protein active sites.

Authors:  C M Venkatachalam; X Jiang; T Oldfield; M Waldman
Journal:  J Mol Graph Model       Date:  2003-01       Impact factor: 2.518

Review 5.  Cell death: critical control points.

Authors:  Nika N Danial; Stanley J Korsmeyer
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

6.  ZINC--a free database of commercially available compounds for virtual screening.

Authors:  John J Irwin; Brian K Shoichet
Journal:  J Chem Inf Model       Date:  2005 Jan-Feb       Impact factor: 4.956

7.  LigandScout: 3-D pharmacophores derived from protein-bound ligands and their use as virtual screening filters.

Authors:  Gerhard Wolber; Thierry Langer
Journal:  J Chem Inf Model       Date:  2005 Jan-Feb       Impact factor: 4.956

8.  Studies leading to potent, dual inhibitors of Bcl-2 and Bcl-xL.

Authors:  Milan Bruncko; Thorsten K Oost; Barbara A Belli; Hong Ding; Mary K Joseph; Aaron Kunzer; Darlene Martineau; William J McClellan; Michael Mitten; Shi-Chung Ng; Paul M Nimmer; Tilman Oltersdorf; Cheol-Min Park; Andrew M Petros; Alexander R Shoemaker; Xiaohong Song; Xilu Wang; Michael D Wendt; Haichao Zhang; Stephen W Fesik; Saul H Rosenberg; Steven W Elmore
Journal:  J Med Chem       Date:  2007-01-26       Impact factor: 7.446

9.  Molecular recognition of the inhibitor AG-1343 by HIV-1 protease: conformationally flexible docking by evolutionary programming.

Authors:  D K Gehlhaar; G M Verkhivker; P A Rejto; C J Sherman; D B Fogel; L J Fogel; S T Freer
Journal:  Chem Biol       Date:  1995-05

Review 10.  The role of Bcl-2 family members in tumorigenesis.

Authors:  Vladimir Kirkin; Stefan Joos; Martin Zörnig
Journal:  Biochim Biophys Acta       Date:  2004-03-01
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  3 in total

1.  Identification of molecular features necessary for selective inhibition of B cell lymphoma proteins using machine learning techniques.

Authors:  Ahmad Mani-Varnosfaderani; Marzieh Sadat Neiband; Ali Benvidi
Journal:  Mol Divers       Date:  2018-07-12       Impact factor: 2.943

2.  Pharmacophore-Based Design of New Chemical Scaffolds as Translational Readthrough-Inducing Drugs (TRIDs).

Authors:  Marco Tutone; Ivana Pibiri; Riccardo Perriera; Ambra Campofelice; Giulia Culletta; Raffaella Melfi; Andrea Pace; Anna Maria Almerico; Laura Lentini
Journal:  ACS Med Chem Lett       Date:  2020-02-18       Impact factor: 4.345

3.  Molecular dynamics, dynamic site mapping, and highthroughput virtual screening on leptin and the Ob receptor as anti-obesity target.

Authors:  Marco Tutone; Licia Pantano; Antonino Lauria; Anna Maria Almerico
Journal:  J Mol Model       Date:  2014-05-06       Impact factor: 1.810

  3 in total

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