Literature DB >> 19066815

Enumeration of bacteriophages using flow cytometry.

Corina P D Brussaard1.   

Abstract

Rapid identification and enumeration of the numerically important bacteriophages has been till recently a major limitation for studies of virus ecology. The development of sensitive nucleic acid stains, in combination with flow cytometric techniques, has changed this. The flow cytometric method allows the detection and discrimination of a wide variety of viruses of different morphology, genome type, and size. The present paper describes an optimized protocol for the enumeration of bacteriophages using a standard benchtop flow cytometer.

Mesh:

Year:  2009        PMID: 19066815     DOI: 10.1007/978-1-60327-164-6_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  13 in total

1.  Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity.

Authors:  Dana Willner; Mike Furlan; Robert Schmieder; Juris A Grasis; David T Pride; David A Relman; Florent E Angly; Tracey McDole; Ray P Mariella; Forest Rohwer; Matthew Haynes
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-14       Impact factor: 11.205

2.  Isolation and genome analysis of single virions using 'single virus genomics'.

Authors:  Lisa Zeigler Allen; Thomas Ishoey; Mark A Novotny; Jeffrey S McLean; Roger S Lasken; Shannon J Williamson
Journal:  J Vis Exp       Date:  2013-05-26       Impact factor: 1.355

3.  Membrane vesicles in sea water: heterogeneous DNA content and implications for viral abundance estimates.

Authors:  Steven J Biller; Lauren D McDaniel; Mya Breitbart; Everett Rogers; John H Paul; Sallie W Chisholm
Journal:  ISME J       Date:  2016-11-08       Impact factor: 10.302

4.  Correlation between viral production and carbon mineralization under nitrate-reducing conditions in aquifer sediment.

Authors:  Donald Pan; Rachel Watson; Dake Wang; Zheng Huan Tan; Daniel D Snow; Karrie A Weber
Journal:  ISME J       Date:  2014-03-27       Impact factor: 10.302

5.  Single virus genomics: a new tool for virus discovery.

Authors:  Lisa Zeigler Allen; Thomas Ishoey; Mark A Novotny; Jeffrey S McLean; Roger S Lasken; Shannon J Williamson
Journal:  PLoS One       Date:  2011-03-23       Impact factor: 3.240

Review 6.  Bacteriophages of lactic acid bacteria and their impact on milk fermentations.

Authors:  Josiane E Garneau; Sylvain Moineau
Journal:  Microb Cell Fact       Date:  2011-08-30       Impact factor: 5.328

7.  Distribution and Niche Separation of Planktonic Microbial Communities in the Water Columns from the Surface to the Hadal Waters of the Japan Trench under the Eutrophic Ocean.

Authors:  Takuro Nunoura; Miho Hirai; Yukari Yoshida-Takashima; Manabu Nishizawa; Shinsuke Kawagucci; Taichi Yokokawa; Junichi Miyazaki; Osamu Koide; Hiroko Makita; Yoshihiro Takaki; Michinari Sunamura; Ken Takai
Journal:  Front Microbiol       Date:  2016-08-10       Impact factor: 5.640

8.  A substantial fraction of phytoplankton-derived DON is resistant to degradation by a metabolically versatile, widely distributed marine bacterium.

Authors:  Luca Polimene; Darren Clark; Susan Kimmance; Paul McCormack
Journal:  PLoS One       Date:  2017-02-03       Impact factor: 3.240

9.  Colloid chemistry pitfall for flow cytometric enumeration of viruses in water.

Authors:  Elena A Dlusskaya; Alexey M Atrazhev; Nicholas J Ashbolt
Journal:  Water Res X       Date:  2019-01-23

10.  Environmental factors influencing gene transfer agent (GTA) mediated transduction in the subtropical ocean.

Authors:  Lauren D McDaniel; Elizabeth C Young; Kimberly B Ritchie; John H Paul
Journal:  PLoS One       Date:  2012-08-15       Impact factor: 3.240

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