Literature DB >> 19065757

An improved extraction protocol for metagenomic DNA from a soil of the Brazilian Atlantic Rainforest.

J H Amorim1, T N S Macena, G V Lacerda, R P Rezende, J C T Dias, M Brendel, J C M Cascardo.   

Abstract

The need for the prospecting for and identification of new biomolecules is a reality. Molecular techniques allow access to the metabolic potential of microorganisms via the isolation of DNA from environmental samples, i.e., without the application of microbial culture techniques. With its great biological diversity, the Atlantic Rainforest biome has a soil rich in organic matter, some components of which interfere negatively in the reactions necessary for the exploitation of its biotechnological potential. Here, we describe a protocol for the optimization of the treatment of soil samples before DNA extraction. The new methodology gives higher yield and quality of extracted DNA as compared with pre-existing techniques, facilitating the amplification and digestion of environmental DNA, and thus allows optimal exploitation of the genetic potential of the Atlantic Rainforest biome.

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Year:  2008        PMID: 19065757     DOI: 10.4238/vol7-4gmr509

Source DB:  PubMed          Journal:  Genet Mol Res        ISSN: 1676-5680


  6 in total

1.  An improved method suitable for isolation of high-quality metagenomic DNA from diverse soils.

Authors:  Sumit Kumar Verma; Himanshi Singh; Prakash C Sharma
Journal:  3 Biotech       Date:  2017-06-29       Impact factor: 2.406

2.  Rapid and efficient method to extract metagenomic DNA from estuarine sediments.

Authors:  Kashif Shamim; Jaya Sharma; Santosh Kumar Dubey
Journal:  3 Biotech       Date:  2017-06-29       Impact factor: 2.406

3.  Extraction of the metagenomic DNA and assessment of the bacterial diversity from the petroleum-polluted sites.

Authors:  Viral G Akbari; Rupal D Pandya; Satya P Singh
Journal:  Environ Monit Assess       Date:  2014-05-29       Impact factor: 2.513

4.  Detection of Fusarium wilt pathogens of Psidium guajava L. in soil using culture independent PCR (ciPCR).

Authors:  Rupesh K Mishra; Brajesh K Pandey; M Muthukumar; Neelam Pathak; Mohammad Zeeshan
Journal:  Saudi J Biol Sci       Date:  2012-11-10       Impact factor: 4.219

5.  SPION-mediated soil DNA extraction and comparative analysis with conventional and commercial kit-based protocol.

Authors:  Tanima Paul; Semanti Basu; Keka Sarkar
Journal:  3 Biotech       Date:  2014-06-24       Impact factor: 2.406

6.  A rapid and efficient strategy to identify and recover biosynthetic gene clusters from soil metagenomes.

Authors:  Timo Negri; Shrikant Mantri; Angel Angelov; Silke Peter; Günther Muth; Alessandra S Eustáquio; Nadine Ziemert
Journal:  Appl Microbiol Biotechnol       Date:  2022-04-18       Impact factor: 5.560

  6 in total

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