Literature DB >> 19063608

Evidence for partially bound states in cooperative molecular recognition interfaces.

Elena Chekmeneva1, Christopher A Hunter, Martin J Packer, Simon M Turega.   

Abstract

A zinc porphyrin equipped with four amide H-bonding sites provides a rigid molecular receptor for the study of cooperative multipoint binding interactions. The interaction of this receptor with a variety of pyridine ligands bearing zero, one, and two H-bonding sites has been studied using UV/vis absorption, (1)H and (31)P NMR spectroscopy, and isothermal titration calorimetry in five different solvents. The results are analyzed in terms of a bound state that populates an ensemble of different complexes in which zero, one, or two of the potential H-bond interactions are formed. The key parameter that determines the behavior of the system is the product of the association constant for the H-bond interaction, K(H), and the effective molarity for the intramolecular interaction, EM. In the system reported here, EM is 0.1-1 M for all of the intramolecular interactions. For strong H-bonds (large K(H) in nonpolar solvents), all of the interactions are formed in the complex and the fully bound state dominates. In this case, additional binding interactions produce incremental increases in complex stability. However, for weaker H-bonds (small K(H) in polar solvents), the formation of additional interactions does not lead to an increase in the overall stability of the complex, due to the population of partially bound states.

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Year:  2008        PMID: 19063608     DOI: 10.1021/ja803434z

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  5 in total

Review 1.  A medicinal chemist's guide to molecular interactions.

Authors:  Caterina Bissantz; Bernd Kuhn; Martin Stahl
Journal:  J Med Chem       Date:  2010-07-22       Impact factor: 7.446

Review 2.  Enthalpy-Entropy Compensation in Biomolecular Recognition: A Computational Perspective.

Authors:  Francesca Peccati; Gonzalo Jiménez-Osés
Journal:  ACS Omega       Date:  2021-04-20

3.  Mix and match backbones for the formation of H-bonded duplexes.

Authors:  Giulia Iadevaia; Alexander E Stross; Anja Neumann; Christopher A Hunter
Journal:  Chem Sci       Date:  2016-01-07       Impact factor: 9.825

4.  Cooperative duplex formation by synthetic H-bonding oligomers.

Authors:  Alexander E Stross; Giulia Iadevaia; Christopher A Hunter
Journal:  Chem Sci       Date:  2015-10-22       Impact factor: 9.825

5.  Mix and match recognition modules for the formation of H-bonded duplexes.

Authors:  Alexander E Stross; Giulia Iadevaia; Christopher A Hunter
Journal:  Chem Sci       Date:  2016-06-07       Impact factor: 9.825

  5 in total

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