Literature DB >> 19059346

A population-average MRI-based atlas collection of the rhesus macaque.

Donald G McLaren1, Kristopher J Kosmatka, Terrance R Oakes, Christopher D Kroenke, Steven G Kohama, John A Matochik, Don K Ingram, Sterling C Johnson.   

Abstract

Magnetic resonance imaging (MRI) studies of non-human primates are becoming increasingly common; however, the well-developed voxel-based methodologies used in human studies are not readily applied to non-human primates. In the present study, we create a population-average MRI-based atlas collection for the rhesus macaque (Macaca mulatta) that can be used with common brain mapping packages such as SPM or FSL. In addition to creating a publicly available T1-weighted atlas (http://www.brainmap.wisc.edu/monkey.html), probabilistic tissue classification maps and T2-weighted atlases were also created. Theses atlases are aligned to the MRI volume from the Saleem, K.S. and Logothetis, N.K. (2006) atlas providing an explicit link to histological sections. Additionally, we have created a transform to integrate these atlases with the F99 surface-based atlas in CARET. It is anticipated that these tools will help facilitate voxel-based imaging methodologies in non-human primate species, which in turn may increase our understanding of brain function, development, and evolution.

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Year:  2008        PMID: 19059346      PMCID: PMC2659879          DOI: 10.1016/j.neuroimage.2008.10.058

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  57 in total

1.  Multisubject fMRI studies and conjunction analyses.

Authors:  K J Friston; A P Holmes; C J Price; C Büchel; K J Worsley
Journal:  Neuroimage       Date:  1999-10       Impact factor: 6.556

2.  Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm.

Authors:  Y Zhang; M Brady; S Smith
Journal:  IEEE Trans Med Imaging       Date:  2001-01       Impact factor: 10.048

Review 3.  Voxel-based morphometry--the methods.

Authors:  J Ashburner; K J Friston
Journal:  Neuroimage       Date:  2000-06       Impact factor: 6.556

4.  High-resolution intersubject averaging and a coordinate system for the cortical surface.

Authors:  B Fischl; M I Sereno; R B Tootell; A M Dale
Journal:  Hum Brain Mapp       Date:  1999       Impact factor: 5.038

5.  An integrated software suite for surface-based analyses of cerebral cortex.

Authors:  D C Van Essen; H A Drury; J Dickson; J Harwell; D Hanlon; C H Anderson
Journal:  J Am Med Inform Assoc       Date:  2001 Sep-Oct       Impact factor: 4.497

6.  A global optimisation method for robust affine registration of brain images.

Authors:  M Jenkinson; S Smith
Journal:  Med Image Anal       Date:  2001-06       Impact factor: 8.545

7.  Mapping visual cortex in monkeys and humans using surface-based atlases.

Authors:  D C Van Essen; J W Lewis; H A Drury; N Hadjikhani; R B Tootell; M Bakircioglu; M I Miller
Journal:  Vision Res       Date:  2001       Impact factor: 1.886

8.  A voxel-based morphometric study of ageing in 465 normal adult human brains.

Authors:  C D Good; I S Johnsrude; J Ashburner; R N Henson; K J Friston; R S Frackowiak
Journal:  Neuroimage       Date:  2001-07       Impact factor: 6.556

9.  Template images for nonhuman primate neuroimaging: 1. Baboon.

Authors:  K J Black; A Z Snyder; J M Koller; M H Gado; J S Perlmutter
Journal:  Neuroimage       Date:  2001-09       Impact factor: 6.556

10.  Template images for nonhuman primate neuroimaging: 2. Macaque.

Authors:  K J Black; J M Koller; A Z Snyder; J S Perlmutter
Journal:  Neuroimage       Date:  2001-09       Impact factor: 6.556

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  122 in total

1.  A web-based brain atlas of the vervet monkey, Chlorocebus aethiops.

Authors:  Roger P Woods; Scott C Fears; Matthew J Jorgensen; Lynn A Fairbanks; Arthur W Toga; Nelson B Freimer
Journal:  Neuroimage       Date:  2010-10-13       Impact factor: 6.556

2.  A calorie-restricted diet decreases brain iron accumulation and preserves motor performance in old rhesus monkeys.

Authors:  Erik K Kastman; Auriel A Willette; Christopher L Coe; Barbara B Bendlin; Kris J Kosmatka; Donald G McLaren; Guofan Xu; Elisa Canu; Aaron S Field; Andrew L Alexander; Mary Lou Voytko; T Mark Beasley; Ricki J Colman; Richard H Weindruch; Sterling C Johnson
Journal:  J Neurosci       Date:  2010-06-09       Impact factor: 6.167

3.  Cortical parcellations of the macaque monkey analyzed on surface-based atlases.

Authors:  David C Van Essen; Matthew F Glasser; Donna L Dierker; John Harwell
Journal:  Cereb Cortex       Date:  2011-11-02       Impact factor: 5.357

4.  Age-related changes in neural volume and microstructure associated with interleukin-6 are ameliorated by a calorie-restricted diet in old rhesus monkeys.

Authors:  A A Willette; B B Bendlin; D G McLaren; E Canu; E K Kastman; K J Kosmatka; G Xu; A S Field; A L Alexander; R J Colman; R H Weindruch; C L Coe; S C Johnson
Journal:  Neuroimage       Date:  2010-03-15       Impact factor: 6.556

5.  Imaging Agonist-Induced D2/D3 Receptor Desensitization and Internalization In Vivo with PET/fMRI.

Authors:  Christin Y Sander; Jacob M Hooker; Ciprian Catana; Bruce R Rosen; Joseph B Mandeville
Journal:  Neuropsychopharmacology       Date:  2015-09-21       Impact factor: 7.853

6.  Population-averaged macaque brain atlas with high-resolution ex vivo DTI integrated into in vivo space.

Authors:  Lei Feng; Tina Jeon; Qiaowen Yu; Minhui Ouyang; Qinmu Peng; Virendra Mishra; Mihovil Pletikos; Nenad Sestan; Michael I Miller; Susumu Mori; Steven Hsiao; Shuwei Liu; Hao Huang
Journal:  Brain Struct Funct       Date:  2017-06-20       Impact factor: 3.270

7.  Early Developmental Trajectories of Functional Connectivity Along the Visual Pathways in Rhesus Monkeys.

Authors:  Z Kovacs-Balint; E Feczko; M Pincus; E Earl; O Miranda-Dominguez; B Howell; E Morin; E Maltbie; L Li; J Steele; M Styner; J Bachevalier; D Fair; M Sanchez
Journal:  Cereb Cortex       Date:  2019-07-22       Impact factor: 5.357

8.  Electric Field Model of Transcranial Electric Stimulation in Nonhuman Primates: Correspondence to Individual Motor Threshold.

Authors:  Won Hee Lee; Sarah H Lisanby; Andrew F Laine; Angel V Peterchev
Journal:  IEEE Trans Biomed Eng       Date:  2015-04-22       Impact factor: 4.538

Review 9.  Large animal models of neurological disorders for gene therapy.

Authors:  Christine Gagliardi; Bruce A Bunnell
Journal:  ILAR J       Date:  2009

10.  Quantification of ethanol methyl (1)H magnetic resonance signal intensity following intravenous ethanol administration in primate brain.

Authors:  Graham S Flory; Jean O'Malley; Kathleen A Grant; Byung Park; Christopher D Kroenke
Journal:  Methods       Date:  2009-12-14       Impact factor: 3.608

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