Literature DB >> 19057007

The human genome in the LINE of fire.

Richard Cordaux1.   

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Year:  2008        PMID: 19057007      PMCID: PMC2614709          DOI: 10.1073/pnas.0810202105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


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  21 in total

Review 1.  Chromosomal stability and the DNA double-stranded break connection.

Authors:  D C van Gent; J H Hoeijmakers; R Kanaar
Journal:  Nat Rev Genet       Date:  2001-03       Impact factor: 53.242

2.  Initial sequencing and analysis of the human genome.

Authors:  E S Lander; L M Linton; B Birren; C Nusbaum; M C Zody; J Baldwin; K Devon; K Dewar; M Doyle; W FitzHugh; R Funke; D Gage; K Harris; A Heaford; J Howland; L Kann; J Lehoczky; R LeVine; P McEwan; K McKernan; J Meldrim; J P Mesirov; C Miranda; W Morris; J Naylor; C Raymond; M Rosetti; R Santos; A Sheridan; C Sougnez; Y Stange-Thomann; N Stojanovic; A Subramanian; D Wyman; J Rogers; J Sulston; R Ainscough; S Beck; D Bentley; J Burton; C Clee; N Carter; A Coulson; R Deadman; P Deloukas; A Dunham; I Dunham; R Durbin; L French; D Grafham; S Gregory; T Hubbard; S Humphray; A Hunt; M Jones; C Lloyd; A McMurray; L Matthews; S Mercer; S Milne; J C Mullikin; A Mungall; R Plumb; M Ross; R Shownkeen; S Sims; R H Waterston; R K Wilson; L W Hillier; J D McPherson; M A Marra; E R Mardis; L A Fulton; A T Chinwalla; K H Pepin; W R Gish; S L Chissoe; M C Wendl; K D Delehaunty; T L Miner; A Delehaunty; J B Kramer; L L Cook; R S Fulton; D L Johnson; P J Minx; S W Clifton; T Hawkins; E Branscomb; P Predki; P Richardson; S Wenning; T Slezak; N Doggett; J F Cheng; A Olsen; S Lucas; C Elkin; E Uberbacher; M Frazier; R A Gibbs; D M Muzny; S E Scherer; J B Bouck; E J Sodergren; K C Worley; C M Rives; J H Gorrell; M L Metzker; S L Naylor; R S Kucherlapati; D L Nelson; G M Weinstock; Y Sakaki; A Fujiyama; M Hattori; T Yada; A Toyoda; T Itoh; C Kawagoe; H Watanabe; Y Totoki; T Taylor; J Weissenbach; R Heilig; W Saurin; F Artiguenave; P Brottier; T Bruls; E Pelletier; C Robert; P Wincker; D R Smith; L Doucette-Stamm; M Rubenfield; K Weinstock; H M Lee; J Dubois; A Rosenthal; M Platzer; G Nyakatura; S Taudien; A Rump; H Yang; J Yu; J Wang; G Huang; J Gu; L Hood; L Rowen; A Madan; S Qin; R W Davis; N A Federspiel; A P Abola; M J Proctor; R M Myers; J Schmutz; M Dickson; J Grimwood; D R Cox; M V Olson; R Kaul; C Raymond; N Shimizu; K Kawasaki; S Minoshima; G A Evans; M Athanasiou; R Schultz; B A Roe; F Chen; H Pan; J Ramser; H Lehrach; R Reinhardt; W R McCombie; M de la Bastide; N Dedhia; H Blöcker; K Hornischer; G Nordsiek; R Agarwala; L Aravind; J A Bailey; A Bateman; S Batzoglou; E Birney; P Bork; D G Brown; C B Burge; L Cerutti; H C Chen; D Church; M Clamp; R R Copley; T Doerks; S R Eddy; E E Eichler; T S Furey; J Galagan; J G Gilbert; C Harmon; Y Hayashizaki; D Haussler; H Hermjakob; K Hokamp; W Jang; L S Johnson; T A Jones; S Kasif; A Kaspryzk; S Kennedy; W J Kent; P Kitts; E V Koonin; I Korf; D Kulp; D Lancet; T M Lowe; A McLysaght; T Mikkelsen; J V Moran; N Mulder; V J Pollara; C P Ponting; G Schuler; J Schultz; G Slater; A F Smit; E Stupka; J Szustakowki; D Thierry-Mieg; J Thierry-Mieg; L Wagner; J Wallis; R Wheeler; A Williams; Y I Wolf; K H Wolfe; S P Yang; R F Yeh; F Collins; M S Guyer; J Peterson; A Felsenfeld; K A Wetterstrand; A Patrinos; M J Morgan; P de Jong; J J Catanese; K Osoegawa; H Shizuya; S Choi; Y J Chen; J Szustakowki
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

3.  DNA repair mediated by endonuclease-independent LINE-1 retrotransposition.

Authors:  Tammy A Morrish; Nicolas Gilbert; Jeremy S Myers; Bethaney J Vincent; Thomas D Stamato; Guillermo E Taccioli; Mark A Batzer; John V Moran
Journal:  Nat Genet       Date:  2002-05-13       Impact factor: 38.330

4.  Genomic deletions created upon LINE-1 retrotransposition.

Authors:  Nicolas Gilbert; Sheila Lutz-Prigge; John V Moran
Journal:  Cell       Date:  2002-08-09       Impact factor: 41.582

5.  Alu retrotransposition-mediated deletion.

Authors:  Pauline A Callinan; Jianxin Wang; Scott W Herke; Randall K Garber; Ping Liang; Mark A Batzer
Journal:  J Mol Biol       Date:  2005-05-13       Impact factor: 5.469

6.  Unequal homologous recombination between LINE-1 elements as a mutational mechanism in human genetic disease.

Authors:  B Burwinkel; M W Kilimann
Journal:  J Mol Biol       Date:  1998-04-03       Impact factor: 5.469

Review 7.  LINE-1 retrotransposons: modulators of quantity and quality of mammalian gene expression?

Authors:  Jeffrey S Han; Jef D Boeke
Journal:  Bioessays       Date:  2005-08       Impact factor: 4.345

8.  An alternative pathway for Alu retrotransposition suggests a role in DNA double-strand break repair.

Authors:  Deepa Srikanta; Shurjo K Sen; Charles T Huang; Erin M Conlin; Ryan M Rhodes; Mark A Batzer
Journal:  Genomics       Date:  2008-11-11       Impact factor: 5.736

9.  Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages.

Authors:  Kyudong Han; Shurjo K Sen; Jianxin Wang; Pauline A Callinan; Jungnam Lee; Richard Cordaux; Ping Liang; Mark A Batzer
Journal:  Nucleic Acids Res       Date:  2005-07-20       Impact factor: 16.971

10.  LINE-1 elements at the sites of molecular rearrangements in Alport syndrome-diffuse leiomyomatosis.

Authors:  Y Segal; B Peissel; A Renieri; M de Marchi; A Ballabio; Y Pei; J Zhou
Journal:  Am J Hum Genet       Date:  1999-01       Impact factor: 11.025

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  6 in total

1.  Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements.

Authors:  E d'Alençon; H Sezutsu; F Legeai; E Permal; S Bernard-Samain; S Gimenez; C Gagneur; F Cousserans; M Shimomura; A Brun-Barale; T Flutre; A Couloux; P East; K Gordon; K Mita; H Quesneville; P Fournier; R Feyereisen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-13       Impact factor: 11.205

Review 2.  Evaluating risks of insertional mutagenesis by DNA transposons in gene therapy.

Authors:  Perry B Hackett; David A Largaespada; Kirsten C Switzer; Laurence J N Cooper
Journal:  Transl Res       Date:  2013-01-10       Impact factor: 7.012

Review 3.  The impact of retrotransposons on human genome evolution.

Authors:  Richard Cordaux; Mark A Batzer
Journal:  Nat Rev Genet       Date:  2009-10       Impact factor: 53.242

4.  Origin of a novel protein-coding gene family with similar signal sequence in Schistosoma japonicum.

Authors:  Evaristus Chibunna Mbanefo; Yu Chuanxin; Mihoko Kikuchi; Mohammed Nasir Shuaibu; Daniel Boamah; Masashi Kirinoki; Naoko Hayashi; Yuichi Chigusa; Yoshio Osada; Shinjiro Hamano; Kenji Hirayama
Journal:  BMC Genomics       Date:  2012-06-20       Impact factor: 3.969

5.  The cancer-associated CTCFL/BORIS protein targets multiple classes of genomic repeats, with a distinct binding and functional preference for humanoid-specific SVA transposable elements.

Authors:  Elena M Pugacheva; Evgeny Teplyakov; Qiongfang Wu; Jingjing Li; Cheng Chen; Chengcheng Meng; Jian Liu; Susan Robinson; Dmitry Loukinov; Abdelhalim Boukaba; Andrew Paul Hutchins; Victor Lobanenkov; Alexander Strunnikov
Journal:  Epigenetics Chromatin       Date:  2016-08-31       Impact factor: 4.954

6.  Transposable Elements: No More 'Junk DNA'.

Authors:  Yun-Ji Kim; Jungnam Lee; Kyudong Han
Journal:  Genomics Inform       Date:  2012-12-31
  6 in total

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