Literature DB >> 19054121

The fate of new bacterial genes.

Chih-Horng Kuo1, Howard Ochman.   

Abstract

Bacteria experience a continual influx of novel genetic material from a wide range of sources and yet their genomes remain relatively small. This aspect of bacterial evolution indicates that most newly arriving sequences are rapidly eliminated; however, numerous new genes persist, as evident from the presence of unique genes in almost all bacterial genomes. This review summarizes the methods for identifying new genes in bacterial genomes and examines the features that promote the retention and elimination of these evolutionary novelties.

Mesh:

Year:  2008        PMID: 19054121     DOI: 10.1111/j.1574-6976.2008.00140.x

Source DB:  PubMed          Journal:  FEMS Microbiol Rev        ISSN: 0168-6445            Impact factor:   16.408


  42 in total

Review 1.  Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria.

Authors:  Beile Gao; Radhey S Gupta
Journal:  Microbiol Mol Biol Rev       Date:  2012-03       Impact factor: 11.056

Review 2.  Molecular signatures for the main phyla of photosynthetic bacteria and their subgroups.

Authors:  Radhey S Gupta
Journal:  Photosynth Res       Date:  2010-04-23       Impact factor: 3.573

3.  The advantages and disadvantages of horizontal gene transfer and the emergence of the first species.

Authors:  Aaron A Vogan; Paul G Higgs
Journal:  Biol Direct       Date:  2011-01-03       Impact factor: 4.540

4.  Ecosystem-specific selection pressures revealed through comparative population genomics.

Authors:  Maureen L Coleman; Sallie W Chisholm
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

5.  The impact of long-distance horizontal gene transfer on prokaryotic genome size.

Authors:  Otto X Cordero; Paulien Hogeweg
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-09       Impact factor: 11.205

Review 6.  Horizontal gene transfer in evolution: facts and challenges.

Authors:  Luis Boto
Journal:  Proc Biol Sci       Date:  2009-10-28       Impact factor: 5.349

7.  Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities.

Authors:  Vincent J Denef; Linda H Kalnejais; Ryan S Mueller; Paul Wilmes; Brett J Baker; Brian C Thomas; Nathan C VerBerkmoes; Robert L Hettich; Jillian F Banfield
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-02       Impact factor: 11.205

8.  Constraint and Contingency Pervade the Emergence of Novel Phenotypes in Complex Metabolic Systems.

Authors:  Sayed-Rzgar Hosseini; Andreas Wagner
Journal:  Biophys J       Date:  2017-08-08       Impact factor: 4.033

9.  Deletional bias across the three domains of life.

Authors:  Chih-Horng Kuo; Howard Ochman
Journal:  Genome Biol Evol       Date:  2009-06-27       Impact factor: 3.416

10.  Signature proteins for the major clades of Cyanobacteria.

Authors:  Radhey S Gupta; Divya W Mathews
Journal:  BMC Evol Biol       Date:  2010-01-25       Impact factor: 3.260

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