Literature DB >> 19054102

RAPD: a database of recombinantly-produced antimicrobial peptides.

Yifeng Li1, Zhengxin Chen.   

Abstract

We have developed the Recombinantly-produced Antimicrobial Peptides Database (RAPD) to house relevant information on recombinant approaches to generate antimicrobial peptides. Key information stored in the database, which is extracted from published experiments, includes expression host, fusion strategy, release method and yield for individual peptides. Bibliographic data directly related to each particular case are also available. RAPD allows easy comparison of the relative popularity and efficiency of different strategies, and can thus be used as a guideline for future production of similar peptides. The database is freely available at http://faculty.ist.unomaha.edu/chen/rapd/index.php.

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Year:  2008        PMID: 19054102     DOI: 10.1111/j.1574-6968.2008.01357.x

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN: 0378-1097            Impact factor:   2.742


  23 in total

Review 1.  Designing antimicrobial peptides: form follows function.

Authors:  Christopher D Fjell; Jan A Hiss; Robert E W Hancock; Gisbert Schneider
Journal:  Nat Rev Drug Discov       Date:  2011-12-16       Impact factor: 84.694

2.  Collection of antimicrobial peptides database and its derivatives: Applications and beyond.

Authors:  Faiza Hanif Waghu; Susan Idicula-Thomas
Journal:  Protein Sci       Date:  2019-09-30       Impact factor: 6.725

Review 3.  Snake venoms: attractive antimicrobial proteinaceous compounds for therapeutic purposes.

Authors:  Nelson Gomes de Oliveira Junior; Marlon Henrique e Silva Cardoso; Octavio Luiz Franco
Journal:  Cell Mol Life Sci       Date:  2013-05-09       Impact factor: 9.261

4.  Improved methods for classification, prediction, and design of antimicrobial peptides.

Authors:  Guangshun Wang
Journal:  Methods Mol Biol       Date:  2015

5.  A New Combination: Anti Glypican-3 scFv and Diphtheria Toxin with the Best Flexible Linker.

Authors:  Hamid Hashemi Yeganeh; Mohammad Heiat; Seyed Moayed Alavian; Ehsan Rezaei
Journal:  Protein J       Date:  2022-08-24       Impact factor: 4.000

6.  Ensemble-AMPPred: Robust AMP Prediction and Recognition Using the Ensemble Learning Method with a New Hybrid Feature for Differentiating AMPs.

Authors:  Supatcha Lertampaiporn; Tayvich Vorapreeda; Apiradee Hongsthong; Chinae Thammarongtham
Journal:  Genes (Basel)       Date:  2021-01-21       Impact factor: 4.096

7.  LAMP: A Database Linking Antimicrobial Peptides.

Authors:  Xiaowei Zhao; Hongyu Wu; Hairong Lu; Guodong Li; Qingshan Huang
Journal:  PLoS One       Date:  2013-06-18       Impact factor: 3.240

8.  DAMPD: a manually curated antimicrobial peptide database.

Authors:  Vijayaraghava Seshadri Sundararajan; Musa Nur Gabere; Ashley Pretorius; Saleem Adam; Alan Christoffels; Minna Lehväslaiho; John A C Archer; Vladimir B Bajic
Journal:  Nucleic Acids Res       Date:  2011-11-21       Impact factor: 16.971

9.  Exploring the pharmacological potential of promiscuous host-defense peptides: from natural screenings to biotechnological applications.

Authors:  Osmar N Silva; Kelly C L Mulder; Aulus E A D Barbosa; Anselmo J Otero-Gonzalez; Carlos Lopez-Abarrategui; Taia M B Rezende; Simoni C Dias; Octávio L Franco
Journal:  Front Microbiol       Date:  2011-11-22       Impact factor: 5.640

10.  CAMP: a useful resource for research on antimicrobial peptides.

Authors:  Shaini Thomas; Shreyas Karnik; Ram Shankar Barai; V K Jayaraman; Susan Idicula-Thomas
Journal:  Nucleic Acids Res       Date:  2009-11-18       Impact factor: 16.971

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