Literature DB >> 19053490

Translocation of RecA-coated double-stranded DNA through solid-state nanopores.

R M M Smeets1, S W Kowalczyk, A R Hall, N H Dekker, C Dekker.   

Abstract

We report translocation of double-stranded DNA (dsDNA) molecules that are coated with RecA protein through solid-state nanopores. Translocation measurements show current-blockade events with a wide variety in time duration (10-4-10-1 s) and conductance blockade values (3-14 nS). Large blockades (11.4+/-0.7 nS) are identified as being caused by translocations of RecA-dsDNA filaments. We confirm these results through a variety of methods, including changing molecular length and using an optical tweezer system to deliver bead-functionalized molecules to the nanopore. We further distinguish two different regimes of translocation: a low-voltage regime (<150 mV) in which the event rate increases exponentially with voltage, and a high-voltage regime in which it remains constant. Our results open possibilities for a variety of future experiments with (partly) protein-coated DNA molecules, which is interesting for both fundamental science and genomic screening applications.

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Year:  2009        PMID: 19053490     DOI: 10.1021/nl803189k

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  34 in total

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Journal:  ACS Nano       Date:  2011-12-23       Impact factor: 15.881

2.  Stochastic sensing of proteins with receptor-modified solid-state nanopores.

Authors:  Ruoshan Wei; Volker Gatterdam; Ralph Wieneke; Robert Tampé; Ulrich Rant
Journal:  Nat Nanotechnol       Date:  2012-03-11       Impact factor: 39.213

3.  Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors.

Authors:  Meni Wanunu; Tali Dadosh; Vishva Ray; Jingmin Jin; Larry McReynolds; Marija Drndić
Journal:  Nat Nanotechnol       Date:  2010-10-24       Impact factor: 39.213

4.  Distinguishable populations report on the interactions of single DNA molecules with solid-state nanopores.

Authors:  Michiel van den Hout; Vincent Krudde; Xander J A Janssen; Nynke H Dekker
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

5.  Molecular control of ionic conduction in polymer nanopores.

Authors:  Eduardo R Cruz-Chu; Thorsten Ritz; Zuzanna S Siwy; Klaus Schulten
Journal:  Faraday Discuss       Date:  2009       Impact factor: 4.008

6.  Nanopore force spectroscopy of aptamer-ligand complexes.

Authors:  Vera Arnaut; Martin Langecker; Friedrich C Simmel
Journal:  Biophys J       Date:  2013-09-03       Impact factor: 4.033

Review 7.  Challenges in DNA motion control and sequence readout using nanopore devices.

Authors:  Spencer Carson; Meni Wanunu
Journal:  Nanotechnology       Date:  2015-02-02       Impact factor: 3.874

8.  Smooth DNA transport through a narrowed pore geometry.

Authors:  Spencer Carson; James Wilson; Aleksei Aksimentiev; Meni Wanunu
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

9.  An engineered ClyA nanopore detects folded target proteins by selective external association and pore entry.

Authors:  Misha Soskine; Annemie Biesemans; Benjamien Moeyaert; Stephen Cheley; Hagan Bayley; Giovanni Maglia
Journal:  Nano Lett       Date:  2012-08-06       Impact factor: 11.189

10.  Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient.

Authors:  Meni Wanunu; Will Morrison; Yitzhak Rabin; Alexander Y Grosberg; Amit Meller
Journal:  Nat Nanotechnol       Date:  2009-12-20       Impact factor: 39.213

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