Literature DB >> 19045103

Modeling molecular and ionic absolute solvation free energies with quasichemical theory bounds.

David M Rogers1, Thomas L Beck.   

Abstract

A recently developed statistical mechanical quasichemical theory (QCT) has led to significant insights into solvation phenomena for both hydrophilic and hydrophobic solutes. The QCT exactly partitions solvation free energies into three components: (1) Inner-shell chemical, (2) outer-shell packing, and (3) outer-shell long-ranged contributions. In this paper, we discuss efficient methods for computing each of the three parts of the free energy. A Bayesian estimation approach is developed to compute the inner-shell chemical and outer-shell packing contributions. We derive upper and lower bounds on the outer-shell long-ranged portion of the free energy by expressing this component in two equivalent ways. Local, high-energy contacts between the solute and solvent are eliminated by spatial conditioning in this free energy piece, leading to near-Gaussian distributions of solute-solvent interaction energies. Thus, the average of the two mean-field bounds yields an accurate and efficient free energy estimate. Aqueous solvation free energy results are presented for several solutes, including methane, perfluoromethane, water, and sodium and chloride ions. The results demonstrate the accuracy and efficiency of the methods. The approach should prove useful in computing solvation free energies in inhomogeneous, restricted environments.

Entities:  

Year:  2008        PMID: 19045103     DOI: 10.1063/1.2985613

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  Assessing the accuracy of approximate treatments of ion hydration based on primitive quasichemical theory.

Authors:  Benoît Roux; Haibo Yu
Journal:  J Chem Phys       Date:  2010-06-21       Impact factor: 3.488

2.  Probing the thermodynamics of competitive ion binding using minimum energy structures.

Authors:  David M Rogers; Susan B Rempe
Journal:  J Phys Chem B       Date:  2011-07-01       Impact factor: 2.991

3.  An Information Theory Approach to Nonlinear, Nonequilibrium Thermodynamics.

Authors:  David M Rogers; Thomas L Beck; Susan B Rempe
Journal:  J Stat Phys       Date:  2011-10       Impact factor: 1.548

4.  Hydration number, topological control, and ion selectivity.

Authors:  Haibo Yu; Sergei Yu Noskov; Benoît Roux
Journal:  J Phys Chem B       Date:  2009-06-25       Impact factor: 2.991

5.  Ion selectivity from local configurations of ligands in solutions and ion channels.

Authors:  D Asthagiri; P D Dixit; S Merchant; M E Paulaitis; L R Pratt; S B Rempe; S Varma
Journal:  Chem Phys Lett       Date:  2010-01-18       Impact factor: 2.328

6.  Conditional solvation thermodynamics of isoleucine in model peptides and the limitations of the group-transfer model.

Authors:  Dheeraj S Tomar; Valéry Weber; B Montgomery Pettitt; D Asthagiri
Journal:  J Phys Chem B       Date:  2014-04-03       Impact factor: 2.991

  6 in total

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