Literature DB >> 19044940

Influence of cis double-bond parametrization on lipid membrane properties: how seemingly insignificant details in force-field change even qualitative trends.

Hector Martinez-Seara1, Tomasz Róg, Mikko Karttunen, Ramon Reigada, Ilpo Vattulainen.   

Abstract

We have employed atomistic molecular dynamics simulations to investigate the effect of double-bond parametrization on lipid membrane properties. As models, we use one-component membranes composed of glycerol-based phosphatidylcholines (PCs) with monounsaturated acyl chains, and we complement these studies by additional PC/cholesterol simulations. We compare differences between double-bond parametrizations by varying the position of the double bond systematically along the lipid hydrocarbon chains. The results give rise for concern: They indicate that the double-bond description may change not only the quantitative but also the qualitative nature of membrane behavior. In particular, we find that the double-bond description which accounts for skew states in the vicinity of a double bond predicts a maximum in membrane disorder, when the double bond resides at the middle of an acyl chain, in agreement with experiments. The more commonly used description which does not accommodate skew states, however, predicts membrane disorder to decrease monotonically as the double bond is shifted from the glycerol backbone to the end of an acyl chain. The results highlight the importance of properly describing double bonds especially in many-component membranes, where the interplay of different molecule types is difficult to predict on intuitive grounds.

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Year:  2008        PMID: 19044940     DOI: 10.1063/1.2976443

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  13 in total

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2.  Studying interfacial reactions of cholesterol sulfate in an unsaturated phosphatidylglycerol layer with ozone using field induced droplet ionization mass spectrometry.

Authors:  Jae Yoon Ko; Sun Mi Choi; Young Min Rhee; J L Beauchamp; Hugh I Kim
Journal:  J Am Soc Mass Spectrom       Date:  2011-11-09       Impact factor: 3.109

3.  Effect of sphingomyelin headgroup size on molecular properties and interactions with cholesterol.

Authors:  Anders Björkbom; Tomasz Róg; Karol Kaszuba; Mayuko Kurita; Shou Yamaguchi; Max Lönnfors; Thomas K M Nyholm; Ilpo Vattulainen; Shigeo Katsumura; J Peter Slotte
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

4.  Conjugated double bonds in lipid bilayers: a molecular dynamics simulation study.

Authors:  Guijun Zhao; P V Subbaiah; See-Wing Chiu; Eric Jakobsson; H L Scott
Journal:  Chem Phys Lipids       Date:  2011-02-12       Impact factor: 3.329

5.  Cholesterol induces specific spatial and orientational order in cholesterol/phospholipid membranes.

Authors:  Hector Martinez-Seara; Tomasz Róg; Mikko Karttunen; Ilpo Vattulainen; Ramon Reigada
Journal:  PLoS One       Date:  2010-06-17       Impact factor: 3.240

6.  Conical lipids in flat bilayers induce packing defects similar to that induced by positive curvature.

Authors:  Lydie Vamparys; Romain Gautier; Stefano Vanni; W F Drew Bennett; D Peter Tieleman; Bruno Antonny; Catherine Etchebest; Patrick F J Fuchs
Journal:  Biophys J       Date:  2013-02-05       Impact factor: 4.033

7.  Effect of cholesterol on structural and mechanical properties of membranes depends on lipid chain saturation.

Authors:  Jianjun Pan; Stephanie Tristram-Nagle; John F Nagle
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-08-25

8.  Areas of monounsaturated diacylphosphatidylcholines.

Authors:  Norbert Kucerka; Jana Gallová; Daniela Uhríková; Pavol Balgavý; Monica Bulacu; Siewert-Jan Marrink; John Katsaras
Journal:  Biophys J       Date:  2009-10-07       Impact factor: 4.033

9.  Effects of dimethyl sulfoxide in cholesterol-containing lipid membranes: a comparative study of experiments in silico and with cells.

Authors:  Marie-Amélie de Ménorval; Lluis M Mir; M Laura Fernández; Ramon Reigada
Journal:  PLoS One       Date:  2012-07-25       Impact factor: 3.240

10.  Atomistic study of lipid membranes containing chloroform: looking for a lipid-mediated mechanism of anesthesia.

Authors:  Ramon Reigada
Journal:  PLoS One       Date:  2013-01-02       Impact factor: 3.240

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