Literature DB >> 19039607

A genetic association study in the Gambia using tagging polymorphisms in the major histocompatibility complex class III region implicates a HLA-B associated transcript 2 polymorphism in severe malaria susceptibility.

Mahamadou Diakite1, Taane G Clark, Sarah Auburn, Susana Campino, Andrew E Fry, Angela Green, Andrew P Morris, Anna Richardson, Muminatou Jallow, Fatou Sisay-Joof, Margaret Pinder, Dominic P Kwiatkowski, Kirk A Rockett.   

Abstract

The tumour necrosis factor (TNF) gene and other genes flanking it in the major histocompatibility complex (MHC) class III region are potentially important mediators of both immunity and pathogenesis of malaria. We investigated the association of severe malaria with 11 haplotype tagging-polymorphisms for 11 MHC class III candidate genes, including TNF, lymphotoxin alpha (LTA), allograft inflammatory factor 1 (AIF1), and HLA-B associated transcript 2 (BAT2). An analysis of 2,162 case-controls demonstrated the first evidence of association between a BAT2 polymorphism (rs1046089) and severe malaria.

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Year:  2008        PMID： 19039607      PMCID： PMC2992315          DOI： 10.1007/s00439-008-0597-2

Source DB:  PubMed          Journal:  Hum Genet        ISSN： 0340-6717            Impact factor:   4.132


  11 in total

1.  Complete sequence and gene map of a human major histocompatibility complex. The MHC sequencing consortium.

Authors: 
Journal:  Nature       Date:  1999-10-28       Impact factor: 49.962

2.  Complex haplotypic structure of the central MHC region flanking TNF in a West African population.

Authors:  H C Ackerman; G Ribas; M Jallow; R Mott; M Neville; F Sisay-Joof; M Pinder; R D Campbell; D P Kwiatkowski
Journal:  Genes Immun       Date:  2003-10       Impact factor: 2.676

3.  On the usage of HWE for identifying genotyping errors.

Authors:  Yik Y Teo; Andrew E Fry; Taane G Clark; E S Tai; Mark Seielstad
Journal:  Ann Hum Genet       Date:  2007-03-27       Impact factor: 1.670

Review 4.  How malaria has affected the human genome and what human genetics can teach us about malaria.

Authors:  Dominic P Kwiatkowski
Journal:  Am J Hum Genet       Date:  2005-07-06       Impact factor: 11.025

5.  Indicators of life-threatening malaria in African children.

Authors:  K Marsh; D Forster; C Waruiru; I Mwangi; M Winstanley; V Marsh; C Newton; P Winstanley; P Warn; N Peshu
Journal:  N Engl J Med       Date:  1995-05-25       Impact factor: 91.245

6.  Genetic contribution of the BAT2 gene microsatellite polymorphism to the age-at-onset of insulin-dependent diabetes mellitus.

Authors:  M Hashimoto; N Nakamura; H Obayashi; F Kimura; A Moriwaki; G Hasegawa; H Shigeta; Y Kitagawa; K Nakano; M Kondo; M Ohta; M Nishimura
Journal:  Hum Genet       Date:  1999-09       Impact factor: 4.132

7.  HLA class III region and susceptibility to rheumatoid arthritis.

Authors:  D P Singal; J Li; Y Zhu
Journal:  Clin Exp Rheumatol       Date:  2000 Jul-Aug       Impact factor: 4.473

8.  Allele-specific repression of lymphotoxin-alpha by activated B cell factor-1.

Authors:  Julian C Knight; Brendan J Keating; Dominic P Kwiatkowski
Journal:  Nat Genet       Date:  2004-03-28       Impact factor: 38.330

9.  Fine mapping of the MHC Class III region demonstrates association of AIF1 and rheumatoid arthritis.

Authors:  S M J Harney; C Vilariño-Güell; I E Adamopoulos; A-M Sims; R W Lawrence; L R Cardon; J L Newton; C Meisel; J J Pointon; C Darke; N Athanasou; B P Wordsworth; M A Brown
Journal:  Rheumatology (Oxford)       Date:  2008-10-03       Impact factor: 7.580

10.  Tumor necrosis factor and lymphotoxin-alpha polymorphisms and severe malaria in African populations.

Authors:  Taane G Clark; Mahamadou Diakite; Sarah Auburn; Susana Campino; Andrew E Fry; Angela Green; Anna Richardson; Kerrin Small; Yik Y Teo; Jonathan Wilson; Muminatou Jallow; Fatou Sisay-Joof; Margaret Pinder; Michael J Griffiths; Norbert Peshu; Thomas N Williams; Kevin Marsh; Malcolm E Molyneux; Terrie E Taylor; Kirk A Rockett; Dominic P Kwiatkowski
Journal:  J Infect Dis       Date:  2009-02-15       Impact factor: 5.226
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  14 in total

1.  Human lymphocyte antigen B-associated transcript 2, 3, and 5 polymorphisms and haplotypes are associated with susceptibility of Kawasaki disease and coronary artery aneurysm.

Authors:  Yao-Yuan Hsieh; Ying-Ju Lin; Chi-Chen Chang; Da-Yuan Chen; Chin-Mu Hsu; Yu-Kuo Wang; Kung-Hao Hsu; Fuu-Jen Tsai
Journal:  J Clin Lab Anal       Date:  2010       Impact factor: 2.352

2.  Candidate human genetic polymorphisms and severe malaria in a Tanzanian population.

Authors:  Alphaxard Manjurano; Taane G Clark; Behzad Nadjm; George Mtove; Hannah Wangai; Nuno Sepulveda; Susana G Campino; Caroline Maxwell; Raimos Olomi; Kirk R Rockett; Anna Jeffreys; Eleanor M Riley; Hugh Reyburn; Christopher Drakeley
Journal:  PLoS One       Date:  2012-10-29       Impact factor: 3.240

3.  Extended LTA, TNF, LST1 and HLA gene haplotypes and their association with rubella vaccine-induced immunity.

Authors:  Inna G Ovsyannikova; Robert A Vierkant; V Shane Pankratz; Robert M Jacobson; Gregory A Poland
Journal:  PLoS One       Date:  2010-07-27       Impact factor: 3.240

4.  Host candidate gene polymorphisms and clearance of drug-resistant Plasmodium falciparum parasites.

Authors:  Mahamadou Diakite; Eric A Achidi; Olivia Achonduh; Rachel Craik; Abdoulaye A Djimde; Marie-Solange B Evehe; Angie Green; Christina Hubbart; Muntasir Ibrahim; Anna Jeffreys; Baldip K Khan; Francis Kimani; Dominic P Kwiatkowski; Wilfred F Mbacham; Sabah Omar Jezan; Jean Bosco Ouedraogo; Kirk Rockett; Kate Rowlands; Nawal Tagelsir; Mamadou M Tekete; Issaka Zongo; Lisa C Ranford-Cartwright
Journal:  Malar J       Date:  2011-08-25       Impact factor: 2.979

5.  Investigation of host candidate malaria-associated risk/protective SNPs in a Brazilian Amazonian population.

Authors:  Simone da Silva Santos; Taane G Clark; Susana Campino; Martha Cecília Suarez-Mutis; Kirk A Rockett; Dominic P Kwiatkowski; Octavio Fernandes
Journal:  PLoS One       Date:  2012-05-16       Impact factor: 3.240

6.  Common genetic variants in PRRC2A are associated with both neuromyelitis optica spectrum disorder and multiple sclerosis in Han Chinese population.

Authors:  Juan Zhang; Mei-Jiao Chen; Gui-Xian Zhao; Hong-Fu Li; Lei Wu; Yong-Feng Xu; Yajin Liao; Zengqiang Yuan; Zhi-Ying Wu
Journal:  J Neurol       Date:  2020-08-29       Impact factor: 4.849

7.  Gene-gene interaction and functional impact of polymorphisms on innate immune genes in controlling Plasmodium falciparum blood infection level.

Authors:  Madhumita Basu; Tania Das; Alip Ghosh; Subhadipa Majumder; Ardhendu Kumar Maji; Sumana Datta Kanjilal; Indranil Mukhopadhyay; Susanta Roychowdhury; Soma Banerjee; Sanghamitra Sengupta
Journal:  PLoS One       Date:  2012-10-12       Impact factor: 3.240

8.  Candidate polymorphisms and severe malaria in a Malian population.

Authors:  Ousmane Toure; Salimata Konate; Sibiri Sissoko; Amadou Niangaly; Abdoulaye Barry; Abdourahmane H Sall; Elisabeth Diarra; Belco Poudiougou; Nuno Sepulveda; Susana Campino; Kirk A Rockett; Taane G Clark; Mahamadou A Thera; Ogobara Doumbo
Journal:  PLoS One       Date:  2012-09-05       Impact factor: 3.240

9.  The host genetic diversity in malaria infection.

Authors:  Vitor R R de Mendonça; Marilda Souza Goncalves; Manoel Barral-Netto
Journal:  J Trop Med       Date:  2012-12-13

10.  A study of the TNF/LTA/LTB locus and susceptibility to severe malaria in highland papuan children and adults.

Authors:  Louise M Randall; Enny Kenangalem; Daniel A Lampah; Emiliana Tjitra; Esther D Mwaikambo; Tjandra Handojo; Kim A Piera; Zhen Z Zhao; Fabian de Labastida Rivera; Yonghong Zhou; Karli M McSweeney; Lien Le; Fiona H Amante; Ashraful Haque; Amanda C Stanley; Tonia Woodberry; Ervi Salwati; Donald L Granger; Maurine R Hobbs; Ric N Price; J Brice Weinberg; Grant W Montgomery; Nicholas M Anstey; Christian R Engwerda
Journal:  Malar J       Date:  2010-10-29       Impact factor: 2.979
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