Literature DB >> 19035469

Nonparametric methods for measurements below detection limit.

Donghui Zhang1, Chunpeng Fan, Juan Zhang, Cun-Hui Zhang.   

Abstract

Analytical data are often subject to left-censoring when the actual values to be quantified fall below the limit of detection. The primary interest of this paper is statistical inference for the two-sample problem. Most of the current publications are centered around naive approaches or the parametric Tobit model approach. These methods may not be suitable for data with high censoring rates and relatively small sample sizes. In this paper, we establish the theoretical equivalence of three nonparametric methods: the Wilcoxon rank sum, the Gehan, and the Peto-Peto tests, under fixed left-censoring and other mild conditions. We then develop a nonparametric point and interval estimation procedure for the location shift model. A large set of simulations compares 14 methods including naive, parametric, and nonparametric methods. The results clearly favor the nonparametric methods for a range of sample sizes and censoring rates. Simulations also demonstrate satisfactory point and interval estimation results. Finally, a real data example is given followed by discussion.

Mesh:

Year:  2009        PMID: 19035469     DOI: 10.1002/sim.3488

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  10 in total

Review 1.  Radionuclide transfer to reptiles.

Authors:  Michael D Wood; Nicholas A Beresford; Dmitry V Semenov; Tamara L Yankovich; David Copplestone
Journal:  Radiat Environ Biophys       Date:  2010-08-20       Impact factor: 1.925

2.  Bisphenol A concentration in human saliva related to dental polymer-based fillings.

Authors:  T L L Berge; G B Lygre; B A G Jönsson; C H Lindh; L Björkman
Journal:  Clin Oral Investig       Date:  2017-02-09       Impact factor: 3.573

3.  Accommodating measurements below a limit of detection: a novel application of Cox regression.

Authors:  Gregg E Dinse; Todd A Jusko; Lindsey A Ho; Kaushik Annam; Barry I Graubard; Irva Hertz-Picciotto; Frederick W Miller; Brenda W Gillespie; Clarice R Weinberg
Journal:  Am J Epidemiol       Date:  2014-03-04       Impact factor: 4.897

4.  Behavioral and pharmacokinetic interactions between monoamine oxidase inhibitors and the hallucinogen 5-methoxy-N,N-dimethyltryptamine.

Authors:  Adam L Halberstadt
Journal:  Pharmacol Biochem Behav       Date:  2016-01-15       Impact factor: 3.533

5.  Glycolipid-peptide conjugate vaccines elicit CD8+ T-cell responses and prevent breast cancer metastasis.

Authors:  Olivia K Burn; Kathryn Farrand; Tara Pritchard; Sarah Draper; Ching-Wen Tang; Anna H Mooney; Alfonso J Schmidt; Sung H Yang; Geoffrey M Williams; Margaret A Brimble; Matheswaran Kandasamy; Andrew J Marshall; Kate Clarke; Gavin F Painter; Ian F Hermans; Robert Weinkove
Journal:  Clin Transl Immunology       Date:  2022-07-03

6.  HIV persistence in tissue macrophages of humanized myeloid-only mice during antiretroviral therapy.

Authors:  Jenna B Honeycutt; William O Thayer; Caroline E Baker; Ruy M Ribeiro; Steven M Lada; Youfang Cao; Rachel A Cleary; Michael G Hudgens; Douglas D Richman; J Victor Garcia
Journal:  Nat Med       Date:  2017-04-17       Impact factor: 53.440

7.  Metabolomics variable selection and classification in the presence of observations below the detection limit using an extension of ERp.

Authors:  Mari van Reenen; Johan A Westerhuis; Carolus J Reinecke; J Hendrik Venter
Journal:  BMC Bioinformatics       Date:  2017-02-02       Impact factor: 3.169

Review 8.  A Review on Differential Abundance Analysis Methods for Mass Spectrometry-Based Metabolomic Data.

Authors:  Zhengyan Huang; Chi Wang
Journal:  Metabolites       Date:  2022-03-30

9.  Inflammatory Serum Protein Profiling of Patients with Lumbar Radicular Pain One Year after Disc Herniation.

Authors:  Aurora Moen; Anne-Li Lind; Måns Thulin; Masood Kamali-Moghaddam; Cecilie Røe; Johannes Gjerstad; Torsten Gordh
Journal:  Int J Inflam       Date:  2016-05-11

10.  Differential Abundance Analysis with Bayes Shrinkage Estimation of Variance (DASEV) for Zero-Inflated Proteomic and Metabolomic Data.

Authors:  Zhengyan Huang; Andrew N Lane; Teresa W-M Fan; Richard M Higashi; Heidi L Weiss; Xiangrong Yin; Chi Wang
Journal:  Sci Rep       Date:  2020-01-21       Impact factor: 4.379

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.