Literature DB >> 19034265

Much room for improvement in deposition rates of expression microarray datasets.

Scott A Ochsner, David L Steffen, Christian J Stoeckert, Neil J McKenna.   

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Year:  2008        PMID： 19034265      PMCID： PMC2975491          DOI： 10.1038/nmeth1208-991

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  2 in total

1.  Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

Authors:  A Brazma; P Hingamp; J Quackenbush; G Sherlock; P Spellman; C Stoeckert; J Aach; W Ansorge; C A Ball; H C Causton; T Gaasterland; P Glenisson; F C Holstege; I F Kim; V Markowitz; J C Matese; H Parkinson; A Robinson; U Sarkans; S Schulze-Kremer; J Stewart; R Taylor; J Vilo; M Vingron
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

2.  Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles.

Authors:  Daniel R Rhodes; Shanker Kalyana-Sundaram; Vasudeva Mahavisno; Radhika Varambally; Jianjun Yu; Benjamin B Briggs; Terrence R Barrette; Matthew J Anstet; Colleen Kincead-Beal; Prakash Kulkarni; Sooryanaryana Varambally; Debashis Ghosh; Arul M Chinnaiyan
Journal:  Neoplasia       Date:  2007-02       Impact factor: 5.715
  2 in total
  20 in total

1.  Transcriptomine, a web resource for nuclear receptor signaling transcriptomes.

Authors:  Scott A Ochsner; Christopher M Watkins; Apollo McOwiti; Xueping Xu; Yolanda F Darlington; Michael D Dehart; Austin J Cooney; David L Steffen; Lauren B Becnel; Neil J McKenna
Journal:  Physiol Genomics       Date:  2012-07-10       Impact factor: 3.107

2.  Research resource: Tissue-specific transcriptomics and cistromics of nuclear receptor signaling: a web research resource.

Authors:  Scott A Ochsner; Christopher M Watkins; Benjamin S LaGrone; David L Steffen; Neil J McKenna
Journal:  Mol Endocrinol       Date:  2010-08-04

3.  Recall and bias of retrieving gene expression microarray datasets through PubMed identifiers.

Authors:  Heather Piwowar; Wendy Chapman
Journal:  J Biomed Discov Collab       Date:  2010-03-28

4.  Systematic archiving and access to health research data: rationale, current status and way forward.

Authors:  Manju Rani; Brian S Buckley
Journal:  Bull World Health Organ       Date:  2012-10-10       Impact factor: 9.408

Review 5.  Minireview: progress and challenges in proteomics data management, sharing, and integration.

Authors:  Lauren B Becnel; Neil J McKenna
Journal:  Mol Endocrinol       Date:  2012-08-17

6.  Research Resource: A Reference Transcriptome for Constitutive Androstane Receptor and Pregnane X Receptor Xenobiotic Signaling.

Authors:  Scott A Ochsner; Anna Tsimelzon; Jianrong Dong; Cristian Coarfa; Neil J McKenna
Journal:  Mol Endocrinol       Date:  2016-07-13

7.  No Dataset Left Behind: Mechanistic Insights into Thyroid Receptor Signaling Through Transcriptomic Consensome Meta-Analysis.

Authors:  Scott A Ochsner; Neil J McKenna
Journal:  Thyroid       Date:  2020-01-29       Impact factor: 6.568

8.  Sharing clinical research data in the United States under the Health Insurance Portability and Accountability Act and the Privacy Rule.

Authors:  James D Miller
Journal:  Trials       Date:  2010-11-19       Impact factor: 2.279

9.  Microarray meta-analysis database (M(2)DB): a uniformly pre-processed, quality controlled, and manually curated human clinical microarray database.

Authors:  Wei-Chung Cheng; Min-Lung Tsai; Cheng-Wei Chang; Ching-Lung Huang; Chaang-Ray Chen; Wun-Yi Shu; Yun-Shien Lee; Tzu-Hao Wang; Ji-Hong Hong; Chia-Yang Li; Ian C Hsu
Journal:  BMC Bioinformatics       Date:  2010-08-10       Impact factor: 3.169

10.  More data, please!

Authors:  Keith Baggerly
Journal:  Clin Chem       Date:  2013-01-22       Impact factor: 8.327
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