Literature DB >> 19028901

Complete genome sequence of Rhodobacter sphaeroides KD131.

Si-Kyu Lim1, Sang Jun Kim, Sun Ho Cha, You-Kwan Oh, Hae-Jin Rhee, Mi-Sun Kim, Jeong K Lee.   

Abstract

Rhodobacter sphaeroides is a purple nonsulfur photosynthetic bacterium that is considered a possible source of H(2) production. R. sphaeroides KD131, which was isolated from sea mud in South Korea, was found to produce high levels of H(2). Here we report the complete and annotated genome sequence of R. sphaeroides KD131.

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Year:  2008        PMID： 19028901      PMCID： PMC2632106          DOI： 10.1128/JB.01565-08

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

2.  UniRef: comprehensive and non-redundant UniProt reference clusters.

Authors:  Baris E Suzek; Hongzhan Huang; Peter McGarvey; Raja Mazumder; Cathy H Wu
Journal:  Bioinformatics       Date:  2007-03-22       Impact factor: 6.937

Review 3.  A genomic perspective on protein families.

Authors:  R L Tatusov; E V Koonin; D J Lipman
Journal:  Science       Date:  1997-10-24       Impact factor: 47.728

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Reductive effect of H(2) uptake and poly-beta-hydroxybutyrate formation on nitrogenase-mediated H(2) accumulation of Rhodobacter sphaeroides according to light intensity.

Authors:  I-H Lee; J Y Park; D H Kho; M-S Kim; J K Lee
Journal:  Appl Microbiol Biotechnol       Date:  2002-08-10       Impact factor: 4.813

6.  Functional genomic analysis of three nitrogenase isozymes in the photosynthetic bacterium Rhodopseudomonas palustris.

Authors:  Yasuhiro Oda; Sudip K Samanta; Federico E Rey; Liyou Wu; Xiudan Liu; Tingfen Yan; Jizhong Zhou; Caroline S Harwood
Journal:  J Bacteriol       Date:  2005-11       Impact factor: 3.490

7.  Automated finishing with autofinish.

Authors:  D Gordon; C Desmarais; P Green
Journal:  Genome Res       Date:  2001-04       Impact factor: 9.043

8.  KEGG for linking genomes to life and the environment.

Authors:  Minoru Kanehisa; Michihiro Araki; Susumu Goto; Masahiro Hattori; Mika Hirakawa; Masumi Itoh; Toshiaki Katayama; Shuichi Kawashima; Shujiro Okuda; Toshiaki Tokimatsu; Yoshihiro Yamanishi
Journal:  Nucleic Acids Res       Date:  2007-12-12       Impact factor: 16.971

9.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2007-12-11       Impact factor: 16.971

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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  14 in total

Review 1.  Maintenance of multipartite genome system and its functional significance in bacteria.

Authors:  Hari Sharan Misra; Ganesh Kumar Maurya; Swathi Kota; Vijaya Kumar Charaka
Journal:  J Genet       Date:  2018-09       Impact factor: 1.166

2.  Network identification and flux quantification of glucose metabolism in Rhodobacter sphaeroides under photoheterotrophic H(2)-producing conditions.

Authors:  Yongzhen Tao; Deng Liu; Xing Yan; Zhihua Zhou; Jeong K Lee; Chen Yang
Journal:  J Bacteriol       Date:  2011-11-04       Impact factor: 3.490

3.  Occurrence and sequence of Sphaeroides Heme Protein and diheme cytochrome C in purple photosynthetic bacteria in the family Rhodobacteraceae.

Authors:  Terry E Meyer; John A Kyndt; Michael A Cusanovich
Journal:  BMC Biochem       Date:  2010-06-29       Impact factor: 4.059

4.  Genome sequence of Rhodobacter sphaeroides Strain WS8N.

Authors:  Steven L Porter; David A Wilkinson; Elaine D Byles; George H Wadhams; Stephen Taylor; Nigel J Saunders; Judith P Armitage
Journal:  J Bacteriol       Date:  2011-05-27       Impact factor: 3.490

5.  Salt stress-induced changes in the transcriptome, compatible solutes, and membrane lipids in the facultatively phototrophic bacterium Rhodobacter sphaeroides.

Authors:  Minoru Tsuzuki; Oleg V Moskvin; Masayuki Kuribayashi; Kiichi Sato; Susana Retamal; Mitsuru Abo; Jill Zeilstra-Ryalls; Mark Gomelsky
Journal:  Appl Environ Microbiol       Date:  2011-09-09       Impact factor: 4.792

6.  Identification, functional studies, and genomic comparisons of new members of the NnrR regulon in Rhodobacter sphaeroides.

Authors:  Angela Hartsock; James P Shapleigh
Journal:  J Bacteriol       Date:  2009-12-04       Impact factor: 3.490

7.  Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome.

Authors:  Wayne S Kontur; Wendy S Schackwitz; Natalia Ivanova; Joel Martin; Kurt Labutti; Shweta Deshpande; Hope N Tice; Christa Pennacchio; Erica Sodergren; George M Weinstock; Daniel R Noguera; Timothy J Donohue
Journal:  J Bacteriol       Date:  2012-12       Impact factor: 3.490

8.  Role of norEF in denitrification, elucidated by physiological experiments with Rhodobacter sphaeroides.

Authors:  Linda L Bergaust; Angela Hartsock; Binbin Liu; Lars R Bakken; James P Shapleigh
Journal:  J Bacteriol       Date:  2014-04-04       Impact factor: 3.490

9.  Carbon metabolic pathways in phototrophic bacteria and their broader evolutionary implications.

Authors:  Kuo-Hsiang Tang; Yinjie J Tang; Robert Eugene Blankenship
Journal:  Front Microbiol       Date:  2011-08-01       Impact factor: 5.640

10.  Metabolic network modeling of redox balancing and biohydrogen production in purple nonsulfur bacteria.

Authors:  Oliver Hädicke; Hartmut Grammel; Steffen Klamt
Journal:  BMC Syst Biol       Date:  2011-09-25
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