| Literature DB >> 19025595 |
Jorge Melendez-Zajgla1, Luis Del Pozo, Gisela Ceballos, Vilma Maldonado.
Abstract
Tissue inhibitors of metalloproteinases (TIMPs) regulate diverse processes, including extracellular matrix (ECM) remodeling, and growth factors and their receptors' activities through the inhibition of matrix metalloproteinases (MMPs). Recent evidence has shown that this family of four members (TIMP-1 to TIMP-4) can also control other important processes, such as proliferation and apoptosis, by a mechanism independent of their MMP inhibitory actions. Of these inhibitors, the most recently identified and least studied is TIMP-4. Initially cloned in human and, later, in mouse, TIMP-4 expression is restricted to heart, kidney, pancreas, colon, testes, brain and adipose tissue. This restricted expression suggests specific and different physiological functions. The present review summarizes the information available for this protein and also provides a putative structural model in order to propose potential relevant directions toward solving its function and role in diseases such as cancer.Entities:
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Year: 2008 PMID: 19025595 PMCID: PMC2599898 DOI: 10.1186/1476-4598-7-85
Source DB: PubMed Journal: Mol Cancer ISSN: 1476-4598 Impact factor: 27.401
Figure 1Comparison of the amino acid sequence of the human TIMP-4 (hTIMP-4) with those of the other human TIMPs (hTIMP-1, hTIMP-2, and hTIMP3) and TIMP-4 from Pan troglodytes (paTIMP-4) Mus musculus (muTIMP-4), Rattus norvegicus (raTIMP-4), Bos taurus (boTIMP-4), and Takifugus rubripes (tkTIMP-4). The residues that differ from those encoded by hTIMP-4 are indicated. The secondary structure elements are aligned with the amino acid sequence of the TIMPs and labeled (H and β mean "helix" and "β-strand", respectively). The following amino acid sequences were used in the alignment (The GenInfo Identifier numbers, gi, are shown in parentheses): hTIMP-1 (49456917), hTIMP-2 (4507511), hTIMP-3 (47678717), hTIMP-4 (3493223), paTIMP-4 (55619817), muTIMP-4 (110625888), raTIMP-4 (160370007), boTIMP-4 (109886638), tkTIMP-4 (29611415). The alignment was performed with ClustalX (Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. and Higgins, D.G. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24:4876–4882).
Sequence identity and similarity shown by human and non-human TIMPs compared to the human TIMP-4.
| hTIMP-1 | 37 | 57 |
| hTIMP-2 | 51 | 70 |
| hTIMP-3 | 51 | 70 |
| paTIMP-4 | 100 | - |
| muTIMP-4 | 91 | 95 |
| raTIMP-4 | 92 | 96 |
| boTIMP-4 | 90 | 96 |
| tkTIMP-4 | 55 | 73 |
| drTIMP* | 21 | 43 |
The amino acid sequences analyzed are the same as shown in Fig. 1 and the analysis was performed with BioEdit (Hall, T.A., 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT.Nucl. Acids. Symp. Ser. 41:95–98).
* Drosophila melanogaster TIMP (gi 4157982)
Figure 2Cartoon representation of the crystallography structure of the human TIMP-2 in uncomplexed state (A) and the bovine TIMP-2 complexed with the catalytic domain on the metalloproteinase 13 (cdMMP-13) (B). The regions of TIMP-2 folded as helices and β-strands are colored in red and yellow, respectively. The six conserved disulfide bridges characterizing the TIMP structure are shown in blue in figure A. In B, the cdMMP-13 is colored in blue and the catalytic Zn is colored in magenta and shown in space-filled format. The residues Cys1, Ser2 and Cys3 that form the core of the molecular edge of the inhibitor that occupies the active-site cleft of the MMP, and the Cys72 and Cys101 are shown in stick format and colored yellow. The figure was prepared using PyMOL® and the coordinates of PDB 1BR9 (Fig. 2A) and PDB 2E2D (Fig. 2B).
Inhibitory activity of TIMP-4 on matrix metalloproteinases.
| TIMP-4 | Target MMP | Kinetic parameter | Key Residue(s) | Ref. |
| full-length | cdMMP-11 | ? | [ | |
| full-lenght | cdMMP-11 | IC50 19 nM | ? | [ |
| full-lenght | MMP-1 | ? | [ | |
| N-TIMP-42 | MMP-2 | ? | [ | |
| full-lenght | MMP-2 | ? | [ | |
| full-lenght | MMP-2 | IC50 3 nM | ? | [ |
| full-lenght | cdMMP-31 | ? | [ | |
| full-lenght | MMP-3 | IC50 45 nM | ? | [ |
| full-lenght | MMP-3 | ? | [ | |
| full-lenght | MMP-7 | IC50 8 nM | ? | [ |
| N-TIMP-4 | cdMMP-81 | Ser2 | [ | |
| N-TIMP-4 | cdMMP-91 | Ser2 | [ | |
| full-lenght | MMP-9 | IC50 83 nM | ? | [ |
| full-lenght | MMP-26 | IC50 0.4 nM | ? | [ |
| N-TIMP-4 | mbMT1-MMP3 | ? | [ | |
| full-lenght | sMT1-MMP3 | ? | [ | |
| N-TIMP-4 | ADAM-17/TACE | ? | [ | |
| full-lenght | ADAM-17/TACE | ? | [ | |
| full-lenght | cdADAM331 | ? | [ |
The table shows the kinetic parameter of the TIMP-4 target matrix metalloproteinase (MMP) and, when available, the key residue involved in the interaction.
1 Catalytic domain of the metalloproteinase.
2 Amino-terminal domain of TIMP-4.
3 mbMT1-MMP and sMT1-MMP refer to membrane-bond and soluble forms of Membrane Type 1 Matrix Metalloproteinase, respectively.
K= Inhibitory constant; IC50 = Median inhibitory constant; Kapp = Apparent inhibitory constant. ? = not studied.
TIMP-4 expression in human cancer.
| Breast | IHC | ↑ in early stages, ↓ in advanced stages | [ |
| Ovary | IHC | ↑ | [ |
| Cervical | RT-PCR | ↑ | [ |
| Prostate | IHC | ↑ in early stages, ↓ in advanced stages | [ |
| Gliomas | RT-PCR | ↑ in early stages, ↓ in advanced stages | [ |
| Pancreas | IHC | ↓ | [ |
| Colon | IHC | ↑ | [ |
| Endometrium | IHC | ↑ | [ |
| Kidney Papillary | RT-PCR | ↑ | [ |
| Kidney Clear cell | RT-PCR | ↓ | [ |
Published research.
Up and down arrows represent increased and decreased expression, respectively
TIMP-4 expression in human cancer.
| Glioblastoma multiforme | ↑ | 2 | 1.2E-5 to 1.8E-17 |
| Oligodendroglioma | ↑ | 2 | 1.5E-11 to 7.8E-17 |
| Astrocytoma | ↑ | 2 | 5.3E-5 to 1.4E-16 |
| Hairy cell leukemia | ↑ | 1 | 7-1E-8 |
| Seminoma | ↑ | 1 | 3.1E-13 |
| Bladder | ↓ | 2 | 2.2E-5 to 9.8E-8 |
| Head and Neck | ↓ | 1 | 2.4E-7 |
| Prostate | ↓ | 1 | 3.1E-7 |
Oncomine database.
Up and down arrows represent increased and decreased expression, respectively. P-value threshold was set to 1E-4