Literature DB >> 19022909

Network analysis identifies weak and strong links in a metapopulation system.

Alejandro F Rozenfeld1, Sophie Arnaud-Haond, Emilio Hernández-García, Víctor M Eguíluz, Ester A Serrão, Carlos M Duarte.   

Abstract

The identification of key populations shaping the structure and connectivity of metapopulation systems is a major challenge in population ecology. The use of molecular markers in the theoretical framework of population genetics has allowed great advances in this field, but the prime question of quantifying the role of each population in the system remains unresolved. Furthermore, the use and interpretation of classical methods are still bounded by the need for a priori information and underlying assumptions that are seldom respected in natural systems. Network theory was applied to map the genetic structure in a metapopulation system by using microsatellite data from populations of a threatened seagrass, Posidonia oceanica, across its whole geographical range. The network approach, free from a priori assumptions and from the usual underlying hypotheses required for the interpretation of classical analyses, allows both the straightforward characterization of hierarchical population structure and the detection of populations acting as hubs critical for relaying gene flow or sustaining the metapopulation system. This development opens perspectives in ecology and evolution in general, particularly in areas such as conservation biology and epidemiology, where targeting specific populations is crucial.

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Year:  2008        PMID: 19022909      PMCID: PMC2585483          DOI: 10.1073/pnas.0805571105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Specificity and stability in topology of protein networks.

Authors:  Sergei Maslov; Kim Sneppen
Journal:  Science       Date:  2002-05-03       Impact factor: 47.728

2.  Fast response and temporal coherent oscillations in small-world networks.

Authors:  L F Lago-Fernández; R Huerta; F Corbacho; J A Sigüenza
Journal:  Phys Rev Lett       Date:  2000-03-20       Impact factor: 9.161

3.  Large-scale topological and dynamical properties of the Internet.

Authors:  Alexei Vázquez; Romualdo Pastor-Satorras; Alessandro Vespignani
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-06-28

4.  Assortative mixing in networks.

Authors:  M E J Newman
Journal:  Phys Rev Lett       Date:  2002-10-28       Impact factor: 9.161

5.  Population Graphs: the graph theoretic shape of genetic structure.

Authors:  Rodney J Dyer; John D Nason
Journal:  Mol Ecol       Date:  2004-07       Impact factor: 6.185

Review 6.  Network structure and the biology of populations.

Authors:  Robert M May
Journal:  Trends Ecol Evol       Date:  2006-04-03       Impact factor: 17.712

7.  Quantifying population substructure: extending the graph-theoretic approach.

Authors:  Christopher P Brooks
Journal:  Ecology       Date:  2006-04       Impact factor: 5.499

8.  Network thinking in ecology and evolution.

Authors:  Stephen R Proulx; Daniel E L Promislow; Patrick C Phillips
Journal:  Trends Ecol Evol       Date:  2005-06       Impact factor: 17.712

9.  Isolation by Distance.

Authors:  S Wright
Journal:  Genetics       Date:  1943-03       Impact factor: 4.562

10.  Spectrum of genetic diversity and networks of clonal organisms.

Authors:  Alejandro F Rozenfeld; Sophie Arnaud-Haond; Emilio Hernández-García; Víctor M Eguíluz; Manuel A Matías; Ester Serrão; Carlos M Duarte
Journal:  J R Soc Interface       Date:  2007-12-22       Impact factor: 4.118

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  38 in total

1.  Wasting disease regulates long-term population dynamics in a threatened seagrass.

Authors:  James C Bull; Emma J Kenyon; Kevan J Cook
Journal:  Oecologia       Date:  2011-11-11       Impact factor: 3.225

2.  Identifying critical regions in small-world marine metapopulations.

Authors:  James R Watson; David A Siegel; Bruce E Kendall; Satoshi Mitarai; Andrew Rassweiller; Steven D Gaines
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-10       Impact factor: 11.205

3.  Inference and Analysis of Population Structure Using Genetic Data and Network Theory.

Authors:  Gili Greenbaum; Alan R Templeton; Shirli Bar-David
Journal:  Genetics       Date:  2016-02-17       Impact factor: 4.562

4.  Networks of spatial genetic variation across species.

Authors:  Miguel A Fortuna; Rafael G Albaladejo; Laura Fernández; Abelardo Aparicio; Jordi Bascompte
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-27       Impact factor: 11.205

5.  A genotype network reveals homoplastic cycles of convergent evolution in influenza A (H3N2) haemagglutinin.

Authors:  Andreas Wagner
Journal:  Proc Biol Sci       Date:  2014-07-07       Impact factor: 5.349

6.  Assessing the influence of the amount of reachable habitat on genetic structure using landscape and genetic graphs.

Authors:  Paul Savary; Jean-Christophe Foltête; Maarten J van Strien; Hervé Moal; Gilles Vuidel; Stéphane Garnier
Journal:  Heredity (Edinb)       Date:  2021-12-28       Impact factor: 3.821

Review 7.  Inference of population history by coupling exploratory and model-driven phylogeographic analyses.

Authors:  Ryan C Garrick; Adalgisa Caccone; Paul Sunnucks
Journal:  Int J Mol Sci       Date:  2010-03-24       Impact factor: 5.923

8.  Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: comparison of methods in two diverse groups of maize inbreds (Zea mays L.).

Authors:  R Rincent; D Laloë; S Nicolas; T Altmann; D Brunel; P Revilla; V M Rodríguez; J Moreno-Gonzalez; A Melchinger; E Bauer; C-C Schoen; N Meyer; C Giauffret; C Bauland; P Jamin; J Laborde; H Monod; P Flament; A Charcosset; L Moreau
Journal:  Genetics       Date:  2012-08-03       Impact factor: 4.562

9.  Evaluating the effects of landscape structure on the recovery of an invasive vertebrate after population control.

Authors:  Pablo García-Díaz; Dean P Anderson; Miguel Lurgi
Journal:  Landsc Ecol       Date:  2019-03-15       Impact factor: 3.848

10.  No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications.

Authors:  Yacine Ben Chehida; Roisin Loughnane; Julie Thumloup; Kristin Kaschner; Cristina Garilao; Patricia E Rosel; Michael C Fontaine
Journal:  Evol Appl       Date:  2021-04-01       Impact factor: 5.183

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