Literature DB >> 19021140

Importance of translation-replication balance for efficient replication by the self-encoded replicase.

Norikazu Ichihashi1, Tomoaki Matsuura, Hiroshi Kita, Kazufumi Hosoda, Takeshi Sunami, Koji Tsukada, Tetsuya Yomo.   

Abstract

In all living systems, the genetic information is replicated by the self-encoded replicase (Rep); this can be said to be a self-encoding system. Recently, we constructed a self-encoding system in liposomes as an artificial cell model, consisting of a reconstituted translation system and an RNA encoding the catalytic subunit of Qbeta Rep and the RNA was replicated by the self-encoded Rep produced by the translation reaction. In this system, both the ribosome (Rib) and Rep bind to the same RNA for translation and replication, respectively. Thus, there could be a dilemma: effective RNA replication requires high levels of Rep translation, but excessive translation in turn inhibits replication. Herein, we actually observed the competition between the Rib and Rep, and evaluated the effect for RNA replication by constructing a kinetic model that quantitatively explained the behavior of the self-encoding system. Both the experimental and theoretical results consistently indicated that the balance between translation and replication is critical for an efficient self-encoded system, and we determined the optimum balance.

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Year:  2008        PMID: 19021140     DOI: 10.1002/cbic.200800518

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  8 in total

1.  Kinetic analysis of aptazyme-regulated gene expression in a cell-free translation system: modeling of ligand-dependent and -independent expression.

Authors:  Shungo Kobori; Norikazu Ichihashi; Yasuaki Kazuta; Tomoaki Matsuura; Tetsuya Yomo
Journal:  RNA       Date:  2012-06-25       Impact factor: 4.942

Review 2.  Constructing partial models of cells.

Authors:  Norikazu Ichihashi; Tomoaki Matsuura; Hiroshi Kita; Takeshi Sunami; Hiroaki Suzuki; Tetsuya Yomo
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-04-28       Impact factor: 10.005

3.  Engineering Polymersome Protocells.

Authors:  Neha P Kamat; Joshua S Katz; Daniel A Hammer
Journal:  J Phys Chem Lett       Date:  2011-07-07       Impact factor: 6.475

4.  Identification of two forms of Q{beta} replicase with different thermal stabilities but identical RNA replication activity.

Authors:  Norikazu Ichihashi; Tomoaki Matsuura; Kazufumi Hosoda; Tetsuya Yomo
Journal:  J Biol Chem       Date:  2010-09-21       Impact factor: 5.157

Review 5.  Diverse roles of host RNA binding proteins in RNA virus replication.

Authors:  Zhenghe Li; Peter D Nagy
Journal:  RNA Biol       Date:  2011-03-01       Impact factor: 4.652

6.  Combinatorial selection for replicable RNA by Qβ replicase while maintaining encoded gene function.

Authors:  Mio Yumura; Natsuko Yamamoto; Katsushi Yokoyama; Hirotada Mori; Tetsuya Yomo; Norikazu Ichihashi
Journal:  PLoS One       Date:  2017-03-22       Impact factor: 3.240

7.  Piecing Together Cell-like Systems.

Authors:  Domenica Torino; Laura Martini; Sheref S Mansy
Journal:  Curr Org Chem       Date:  2013-08       Impact factor: 2.180

Review 8.  Constructive Approaches for Understanding the Origin of Self-Replication and Evolution.

Authors:  Norikazu Ichihashi; Tetsuya Yomo
Journal:  Life (Basel)       Date:  2016-07-13
  8 in total

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