Literature DB >> 19017802

Transcriptome analysis and identification of regulators for long-term plasticity in Aplysia kurodai.

Yong-Seok Lee1, Sun-Lim Choi, Tae-Hyung Kim, Jin-A Lee, Hyong Kyu Kim, Hyoung Kim, Deok-Jin Jang, Jennifer J Lee, Sunghoon Lee, Gwang Sik Sin, Chang-Bae Kim, Yutaka Suzuki, Sumio Sugano, Tai Kubo, Leonid L Moroz, Eric R Kandel, Jong Bhak, Bong-Kiun Kaang.   

Abstract

The marine mollusk Aplysia is a useful model organism for studying the cellular bases of behavior and plasticity. However, molecular studies of Aplysia have been limited by the lack of genomic information. Recently, a large scale characterization of neuronal transcripts was performed in A. californica. Here, we report the analysis of a parallel set of neuronal transcripts from a closely related species A. kurodai found in the northwestern Pacific. We collected 4,859 nonredundant sequences from the nervous system tissue of A. kurodai. By performing microarray and real-time PCR analyses, we found that ApC/EBP, matrilin, antistasin, and eIF3e clones were significantly up-regulated and a BAT1 homologous clone was significantly down-regulated by 5-HT treatment. Among these, we further demonstrated that the Ap-eIF3e plays a key role in 5-HT-induced long-term facilitation (LTF) as a positive regulator.

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Year:  2008        PMID: 19017802      PMCID: PMC2587617          DOI: 10.1073/pnas.0808893105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  45 in total

1.  Evidence for the transforming activity of a truncated Int6 gene, in vitro.

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2.  Large-scale protein annotation through gene ontology.

Authors:  Hanqing Xie; Alon Wasserman; Zurit Levine; Amit Novik; Vladimir Grebinskiy; Avi Shoshan; Liat Mintz
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3.  Construction of a full-length enriched and a 5'-end enriched cDNA library using the oligo-capping method.

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Journal:  Methods Mol Biol       Date:  2003

4.  TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets.

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Journal:  Bioinformatics       Date:  2003-03-22       Impact factor: 6.937

5.  Schizosaccharomyces pombe Int6 and Ras homologs regulate cell division and mitotic fidelity via the proteasome.

Authors:  Hsueh-Chi S Yen; Colin Gordon; Eric C Chang
Journal:  Cell       Date:  2003-01-24       Impact factor: 41.582

Review 6.  Protein homeostasis: a degrading role for Int6/eIF3e.

Authors:  Albrecht G von Arnim; Daniel A Chamovitz
Journal:  Curr Biol       Date:  2003-04-15       Impact factor: 10.834

7.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

Review 8.  Non-hemostatic activity of coagulation factor Xa: potential implications for various diseases.

Authors:  R J Leadley; L Chi; A R Porcari
Journal:  Curr Opin Pharmacol       Date:  2001-04       Impact factor: 5.547

9.  Genome-wide analysis of nuclear mRNA export pathways in Drosophila.

Authors:  Andrea Herold; Luis Teixeira; Elisa Izaurralde
Journal:  EMBO J       Date:  2003-05-15       Impact factor: 11.598

10.  Overexpression and RNA interference of Ap-cyclic AMP-response element binding protein-2, a repressor of long-term facilitation, in Aplysia kurodai sensory-to-motor synapses.

Authors:  Jin-A Lee; Hyoung Kim; Yong-Seok Lee; Bong-Kiun Kaang
Journal:  Neurosci Lett       Date:  2003-01-30       Impact factor: 3.046

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  16 in total

1.  Differential evolutionary rates of neuronal transcriptome in Aplysia kurodai and Aplysia californica as a tool for gene mining.

Authors:  Sun-Lim Choi; Yong-Seok Lee; Young-Soo Rim; Tae-Hyung Kim; Leonid L Moroz; Eric R Kandel; Jong Bhak; Bong-Kiun Kaang
Journal:  J Neurogenet       Date:  2010-07       Impact factor: 1.250

2.  The transcriptome of the early life history stages of the California Sea Hare Aplysia californica.

Authors:  T J Fiedler; A Hudder; S J McKay; S Shivkumar; T R Capo; M C Schmale; P J Walsh
Journal:  Comp Biochem Physiol Part D Genomics Proteomics       Date:  2010-04-02       Impact factor: 2.674

3.  Sensory sea slugs: Towards decoding the molecular toolkit required for a mollusc to smell.

Authors:  Scott F Cummins; Bernard M Degnan
Journal:  Commun Integr Biol       Date:  2010-09

4.  Identification of a serotonin receptor coupled to adenylyl cyclase involved in learning-related heterosynaptic facilitation in Aplysia.

Authors:  Yong-Seok Lee; Sun-Lim Choi; Seung-Hee Lee; Hyoung Kim; Hyungju Park; Nuribalhae Lee; Sue-Hyun Lee; Yeon-Su Chae; Deok-Jin Jang; Eric R Kandel; Bong-Kiun Kaang
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-11       Impact factor: 11.205

5.  Transcriptome and protein domain analyses in Aplysia nervous system with evolutionary implications.

Authors:  Yong-Seok Lee; Tae-Hyung Kim; Sun-Lim Choi; Sunghoon Lee; Jong Bhak; Bong-Kiun Kaang
Journal:  Commun Integr Biol       Date:  2009-07

6.  AU-rich element-binding protein negatively regulates CCAAT enhancer-binding protein mRNA stability during long-term synaptic plasticity in Aplysia.

Authors:  Yong-Seok Lee; Sun-Lim Choi; Heejung Jun; Se-Jeong Yim; Jin-A Lee; Hyoung F Kim; Seung-Hee Lee; Jaehoon Shim; Kyungmin Lee; Deok-Jin Jang; Bong-Kiun Kaang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

7.  Characterization of the rapid transcriptional response to long-term sensitization training in Aplysia californica.

Authors:  Samantha Herdegen; Geraldine Holmes; Ashly Cyriac; Irina E Calin-Jageman; Robert J Calin-Jageman
Journal:  Neurobiol Learn Mem       Date:  2014-08-10       Impact factor: 2.877

Review 8.  Parallel evolution of nitric oxide signaling: diversity of synthesis and memory pathways.

Authors:  Leonid L Moroz; Andrea B Kohn
Journal:  Front Biosci (Landmark Ed)       Date:  2011-06-01

9.  Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes.

Authors:  Eduardo R Macagno; Terry Gaasterland; Lee Edsall; Vineet Bafna; Marcelo B Soares; Todd Scheetz; Thomas Casavant; Corinne Da Silva; Patrick Wincker; Aurélie Tasiemski; Michel Salzet
Journal:  BMC Genomics       Date:  2010-06-25       Impact factor: 3.969

10.  Queen conch (Strombus gigas) testis regresses during the reproductive season at nearshore sites in the Florida Keys.

Authors:  Daniel J Spade; Robert J Griffitt; Li Liu; Nancy J Brown-Peterson; Kevin J Kroll; April Feswick; Robert A Glazer; David S Barber; Nancy D Denslow
Journal:  PLoS One       Date:  2010-09-15       Impact factor: 3.240

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