Literature DB >> 19017492

Suppression subtractive hybridization (SSH) for isolation and characterization of genes related to testicular development in the giant tiger shrimp Penaeus monodon.

Rungnapa Leelatanawit1, Sirawut Klinbunga, Takashi Aoki, Ikuo Hirono, Rudd Valyasevi, Piamsak Menasveta.   

Abstract

Suppression subtractive hybridization (SSH) cDNA libraries of the giant tiger shrimp, Penaeus monodon, were constructed. In total, 178 and 187 clones from the forward and reverse SSH libraries, respectively, of P. monodon were unidirectionally sequenced. From these, 37.1% and 53.5% Expressed Sequence Tags (ESTs) significantly matched known genes (E-value < 1e-04). Three isoforms of P. monodon progestin membrane receptor component 1: PM-PGMRC1-s (1980 bp), PM-PGMRC1-m (2848 bp), and PM-PGMRC1-l (2971 bp), with an identical ORF of 573 bp corresponding to a deduced polypeptide of 190 amino acids, were successfully identified by RACE-PCR. Interestingly, PMPGMRC1 showed a greater expression level in testes of juvenile than broodstock P. monodon (P < 0.05). Dopamine administration (10(-6) mol/shrimp) resulted in up-regulation of PMPGMRC1 in testes of juveniles at 3 hrs post treatment (P < 0.05), but had no effect on PM-Dmc1 (P > 0.05).

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Year:  2008        PMID: 19017492     DOI: 10.5483/bmbrep.2008.41.11.796

Source DB:  PubMed          Journal:  BMB Rep        ISSN: 1976-6696            Impact factor:   4.778


  12 in total

1.  Identification of differentially expressed genes in American cockroach ovaries and testes by suppression subtractive hybridization and the prediction of its miRNAs.

Authors:  Wan Chen; Guo-Fang Jiang; Shu-Hong Sun; Yong Lu; Fei Ma; Bin Li
Journal:  Mol Genet Genomics       Date:  2013-08-31       Impact factor: 3.291

2.  Expression of sex and reproduction-related genes in Marsupenaeus japonicus.

Authors:  Tamera R Callaghan; Bernard M Degnan; Melony J Sellars
Journal:  Mar Biotechnol (NY)       Date:  2010-01-21       Impact factor: 3.619

3.  Identification of testis-relevant genes using in silico analysis from testis ESTs and cDNA microarray in the black tiger shrimp (Penaeus monodon).

Authors:  Thidathip Wongsurawat; Rungnapa Leelatanawit; Natechanok Thamniemdee; Umaporn Uawisetwathana; Nitsara Karoonuthaisiri; Piamsak Menasveta; Sirawut Klinbunga
Journal:  BMC Mol Biol       Date:  2010-08-09       Impact factor: 2.946

4.  Isolation and characterization of genes functionally involved in ovarian development of the giant tiger shrimp Penaeus monodon by suppression subtractive hybridization (SSH).

Authors:  Rachanimuk Preechaphol; Sirawut Klinbunga; Bavornlak Khamnamtong; Piamsak Menasveta
Journal:  Genet Mol Biol       Date:  2010-12-01       Impact factor: 1.771

5.  Predicted sub-populations in a marine shrimp proteome as revealed by combined EST and cDNA data from multiple Penaeus species.

Authors:  Pimlapas Leekitcharoenphon; Udon Taweemuang; Prasit Palittapongarnpim; Rattanawadee Kotewong; Thararat Supasiri; Burachai Sonthayanon
Journal:  BMC Res Notes       Date:  2010-11-11

6.  A cDNA microarray, UniShrimpChip, for identification of genes relevant to testicular development in the black tiger shrimp (Penaeus monodon).

Authors:  Rungnapa Leelatanawit; Umaporn Uawisetwathana; Sirawut Klinbunga; Nitsara Karoonuthaisiri
Journal:  BMC Mol Biol       Date:  2011-04-12       Impact factor: 2.946

Review 7.  The State of "Omics" Research for Farmed Penaeids: Advances in Research and Impediments to Industry Utilization.

Authors:  Jarrod L Guppy; David B Jones; Dean R Jerry; Nicholas M Wade; Herman W Raadsma; Roger Huerlimann; Kyall R Zenger
Journal:  Front Genet       Date:  2018-08-03       Impact factor: 4.599

8.  Validation of reference genes for real-time PCR of reproductive system in the black tiger shrimp.

Authors:  Rungnapa Leelatanawit; Amornpan Klanchui; Umaporn Uawisetwathana; Nitsara Karoonuthaisiri
Journal:  PLoS One       Date:  2012-12-28       Impact factor: 3.240

9.  Identification of male gametogenesis expressed genes from the scallop Nodipecten subnodosus by suppressive subtraction hybridization and pyrosequencing.

Authors:  Raúl Llera-Herrera; Alejandra García-Gasca; Cei Abreu-Goodger; Arnaud Huvet; Ana M Ibarra
Journal:  PLoS One       Date:  2013-09-16       Impact factor: 3.240

10.  Gonadal transcriptomic analysis and differentially expressed genes in the testis and ovary of the Pacific white shrimp (Litopenaeus vannamei).

Authors:  Jinxia Peng; Pinyuan Wei; Bin Zhang; Yongzhen Zhao; Digang Zeng; Xiuli Chen; Ming Li; Xiaohan Chen
Journal:  BMC Genomics       Date:  2015-11-25       Impact factor: 3.969

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