Literature DB >> 19016512

Modified cetyltrimethylammonium bromide method improves robustness and versatility: the benchmark for plant RNA extraction.

Elizabeth J White1, Mauritz Venter, Nicholas F Hiten, Johan T Burger.   

Abstract

A wide range of plant RNA extraction methods are available; however, many of these are limited in their application for a diverse range of plant species. With special emphasis on robustness and versatility, we have improved the cetyltrimethylammonium bromide (CTAB) method and isolated high-quality RNA from 16 different plant species. The major modifications made to the protocol described here were a reduction of sample treatment steps and an increase in beta-mercaptoethanol concentration (to 3%) resulting in a robust, rapid and reproducible plant RNA extraction protocol that can be used for a broad range of plant species and tissue types.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 19016512     DOI: 10.1002/biot.200800207

Source DB:  PubMed          Journal:  Biotechnol J        ISSN: 1860-6768            Impact factor:   4.677


  14 in total

1.  Complete nucleotide sequence of a South African isolate of Grapevine fanleaf virus.

Authors:  Renate L Lamprecht; Hans J Maree; Dirk Stephan; Johan T Burger
Journal:  Virus Genes       Date:  2012-06-05       Impact factor: 2.332

2.  Response of Vitis vinifera cell cultures to Eutypa lata and Trichoderma atroviride culture filtrates: expression of defence-related genes and phenotypes.

Authors:  C Mutawila; C Stander; F Halleen; M A Vivier; L Mostert
Journal:  Protoplasma       Date:  2016-06-28       Impact factor: 3.356

3.  First Chromosome-Scale Assembly and Deep Floral-Bud Transcriptome of a Male Kiwifruit.

Authors:  Jibran Tahir; Ross Crowhurst; Simon Deroles; Elena Hilario; Cecilia Deng; Robert Schaffer; Liam Le Lievre; Cyril Brendolise; David Chagné; Susan E Gardiner; Mareike Knaebel; Andrew Catanach; John McCallum; Paul Datson; Susan Thomson; Lynette R Brownfield; Simona Nardozza; Sarah M Pilkington
Journal:  Front Genet       Date:  2022-05-16       Impact factor: 4.772

4.  Extraction of high quality RNA from polysaccharide matrices using cetyltrimethylammonium bromide.

Authors:  Limin Wang; Jan P Stegemann
Journal:  Biomaterials       Date:  2009-12-03       Impact factor: 12.479

5.  Real-time RT-PCR high-resolution melting curve analysis and multiplex RT-PCR to detect and differentiate grapevine leafroll-associated virus 3 variant groups I, II, III and VI.

Authors:  Rachelle Bester; Anna E C Jooste; Hans J Maree; Johan T Burger
Journal:  Virol J       Date:  2012-09-27       Impact factor: 4.099

6.  The plant growth promoting substance, lumichrome, mimics starch, and ethylene-associated symbiotic responses in lotus and tomato roots.

Authors:  Liezel M Gouws; Eileen Botes; Anna J Wiese; Sandra Trenkamp; Ivone Torres-Jerez; Yuhong Tang; Paul N Hills; Björn Usadel; James R Lloyd; Alisdair R Fernie; Jens Kossmann; Margaretha J van der Merwe
Journal:  Front Plant Sci       Date:  2012-06-11       Impact factor: 5.753

7.  Phylogenomic analysis reveals deep divergence and recombination in an economically important grapevine virus.

Authors:  Hans J Maree; Michael D Pirie; Kristin Oosthuizen; Rachelle Bester; D Jasper G Rees; Johan T Burger
Journal:  PLoS One       Date:  2015-05-18       Impact factor: 3.240

8.  The use of high-throughput small RNA sequencing reveals differentially expressed microRNAs in response to aster yellows phytoplasma-infection in Vitis vinifera cv. 'Chardonnay'.

Authors:  Marius C Snyman; Marie-Chrystine Solofoharivelo; Rose Souza-Richards; Dirk Stephan; Shane Murray; Johan T Burger
Journal:  PLoS One       Date:  2017-08-16       Impact factor: 3.240

9.  Complete nucleotide sequence of a South African isolate of Grapevine fanleaf virus and its associated satellite RNA.

Authors:  Renate L Lamprecht; Monique Spaltman; Dirk Stephan; Thierry Wetzel; Johan T Burger
Journal:  Viruses       Date:  2013-07-17       Impact factor: 5.048

10.  Molecular characterization and expression analysis of pitaya (Hylocereus polyrhizus) HpLRR genes in response to Neoscytalidium dimidiatum infection.

Authors:  Min Xu; Cheng-Li Liu; Yu Fu; Zhi-Wen Liao; Pan-Yang Guo; Rui Xiong; Yu Cheng; Shuang-Shuang Wei; Jia-Quan Huang; Hua Tang
Journal:  BMC Plant Biol       Date:  2020-04-15       Impact factor: 4.215

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.