Literature DB >> 19015022

Multi-stage analysis of gene expression and transcription regulation in C57/B6 mouse liver development.

Tingting Li1, Jian Huang, Ying Jiang, Yan Zeng, Fuchu He, Michael Q Zhang, Zeguang Han, Xuegong Zhang.   

Abstract

The liver performs a number of essential functions for life. The development of such a complex organ relies on finely regulated gene expression profiles which change over time in the development and determine the phenotype and function of the liver. We used high-density oligonucleotide microarrays to study the gene expression and transcription regulation at 14 time points across the C57/B6 mouse liver development, which include E11.5 (embryonic day 11.5), E12.5, E13.5, E14.5, E15.5, E16.5, E17.5, E18.5, Day0 (the day of birth), Day3, Day7, Day14, Day21, and normal adult liver. With these data, we made a comprehensive analysis on gene expression patterns, functional preferences and transcriptional regulations during the liver development. A group of uncharacterized genes which might be involved in the fetal hematopoiesis were detected.

Entities:  

Mesh:

Year:  2008        PMID: 19015022      PMCID: PMC2995988          DOI: 10.1016/j.ygeno.2008.10.006

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  12 in total

1.  Exploration, normalization, and summaries of high density oligonucleotide array probe level data.

Authors:  Rafael A Irizarry; Bridget Hobbs; Francois Collin; Yasmin D Beazer-Barclay; Kristen J Antonellis; Uwe Scherf; Terence P Speed
Journal:  Biostatistics       Date:  2003-04       Impact factor: 5.899

Review 2.  Molecular control of liver development.

Authors:  Valérie A McLin; Aaron M Zorn
Journal:  Clin Liver Dis       Date:  2006-02       Impact factor: 6.126

3.  A novel prognostic subtype of human hepatocellular carcinoma derived from hepatic progenitor cells.

Authors:  Ju-Seog Lee; Jeonghoon Heo; Louis Libbrecht; In-Sun Chu; Pal Kaposi-Novak; Diego F Calvisi; Arsen Mikaelyan; Lewis R Roberts; Anthony J Demetris; Zongtang Sun; Frederik Nevens; Tania Roskams; Snorri S Thorgeirsson
Journal:  Nat Med       Date:  2006-03-12       Impact factor: 53.440

4.  Hepatic specification of the gut endoderm in vitro: cell signaling and transcriptional control.

Authors:  R Gualdi; P Bossard; M Zheng; Y Hamada; J R Coleman; K S Zaret
Journal:  Genes Dev       Date:  1996-07-01       Impact factor: 11.361

5.  Methods for calculating the probabilities of finding patterns in sequences.

Authors:  R Staden
Journal:  Comput Appl Biosci       Date:  1989-04

6.  Mortality in premature mice at birth and during neonatal development.

Authors:  J Loctin; P Delost
Journal:  Reprod Nutr Dev       Date:  1983

7.  DNA motifs in human and mouse proximal promoters predict tissue-specific expression.

Authors:  Andrew D Smith; Pavel Sumazin; Zhenyu Xuan; Michael Q Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

Review 8.  Liver development and regeneration: from laboratory study to clinical therapy.

Authors:  Shoji Hata; Misako Namae; Hiroshi Nishina
Journal:  Dev Growth Differ       Date:  2007-02       Impact factor: 2.053

9.  Somatic development in premature mice from birth to weaning.

Authors:  J Loctin; P Delost
Journal:  Reprod Nutr Dev       Date:  1983

10.  Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.

Authors:  Manhong Dai; Pinglang Wang; Andrew D Boyd; Georgi Kostov; Brian Athey; Edward G Jones; William E Bunney; Richard M Myers; Terry P Speed; Huda Akil; Stanley J Watson; Fan Meng
Journal:  Nucleic Acids Res       Date:  2005-11-10       Impact factor: 16.971

View more
  45 in total

1.  Identification of dedifferentiation and redevelopment phases during postpneumonectomy lung growth.

Authors:  Alvin T Kho; Kaifeng Liu; Gary Visner; Thomas Martin; Francis Boudreault
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2013-08-30       Impact factor: 5.464

2.  Developmental Stage-Specific Hepatocytes Induce Maturation of HepG2 Cells by Rebuilding the Regulatory Circuit.

Authors:  Yanning Li; Demei Liu; Yanhong Zong; Jinsheng Qi; Bin Li; Kun Liu; Hui Xiao
Journal:  Mol Med       Date:  2015-04-14       Impact factor: 6.354

3.  In Vitro Pluripotent Stem Cell Differentiation to Hepatocyte Ceases Further Maturation at an Equivalent Stage of E15 in Mouse Embryonic Liver Development.

Authors:  Ravali Raju; David Chau; Tineke Notelaers; Chad L Myers; Catherine M Verfaillie; Wei-Shou Hu
Journal:  Stem Cells Dev       Date:  2018-05-31       Impact factor: 3.272

4.  Cell Expansion During Directed Differentiation of Stem Cells Toward the Hepatic Lineage.

Authors:  Ravali Raju; David Chau; Dong Seong Cho; Yonsil Park; Catherine M Verfaillie; Wei-Shou Hu
Journal:  Stem Cells Dev       Date:  2016-11-01       Impact factor: 3.272

5.  GATA4 loss of function in liver cancer impedes precursor to hepatocyte transition.

Authors:  Francis O Enane; Wai Ho Shuen; Xiaorong Gu; Ebrahem Quteba; Bartlomiej Przychodzen; Hideki Makishima; Juraj Bodo; Joanna Ng; Chit Lai Chee; Rebecca Ba; Lip Seng Koh; Janice Lim; Rachael Cheong; Marissa Teo; Zhenbo Hu; Kwok Peng Ng; Jaroslaw Maciejewski; Tomas Radivoyevitch; Alexander Chung; London Lucien Ooi; Yu Meng Tan; Peng-Chung Cheow; Pierce Chow; Chung Yip Chan; Kiat Hon Lim; Lisa Yerian; Eric Hsi; Han Chong Toh; Yogen Saunthararajah
Journal:  J Clin Invest       Date:  2017-07-31       Impact factor: 14.808

6.  Comparison of gene expression in hepatocellular carcinoma, liver development, and liver regeneration.

Authors:  Tingting Li; Bingbing Wan; Jian Huang; Xuegong Zhang
Journal:  Mol Genet Genomics       Date:  2010-04-01       Impact factor: 3.291

7.  RNA sequencing reveals dynamic changes of mRNA abundance of cytochromes P450 and their alternative transcripts during mouse liver development.

Authors:  Lai Peng; Byunggil Yoo; Sumedha S Gunewardena; Hong Lu; Curtis D Klaassen; Xiao-Bo Zhong
Journal:  Drug Metab Dispos       Date:  2012-03-20       Impact factor: 3.922

Review 8.  The road to regenerative liver therapies: the triumphs, trials and tribulations.

Authors:  Ravali Raju; David Chau; Catherine M Verfaillie; Wei-Shou Hu
Journal:  Biotechnol Adv       Date:  2013-09-19       Impact factor: 14.227

9.  RNA-Seq reveals different mRNA abundance of transporters and their alternative transcript isoforms during liver development.

Authors:  Julia Yue Cui; Sumedha S Gunewardena; Byunggil Yoo; Jie Liu; Helen J Renaud; Hong Lu; Xiao-bo Zhong; Curtis D Klaassen
Journal:  Toxicol Sci       Date:  2012-03-27       Impact factor: 4.849

10.  Translation efficiency in humans: tissue specificity, global optimization and differences between developmental stages.

Authors:  Yedael Y Waldman; Tamir Tuller; Tomer Shlomi; Roded Sharan; Eytan Ruppin
Journal:  Nucleic Acids Res       Date:  2010-01-21       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.