Literature DB >> 19012285

Optimization of the pyridyl nucleobase scaffold for polymerase recognition and unnatural base pair replication.

Yoshiyuki Hari1, Gil Tae Hwang, Aaron M Leconte, Nicolas Joubert, Michal Hocek, Floyd E Romesberg.   

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Year:  2008        PMID: 19012285      PMCID: PMC2790818          DOI: 10.1002/cbic.200800577

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


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  17 in total

Review 1.  Adding amino acids to the genetic repertoire.

Authors:  Jianming Xie; Peter G Schultz
Journal:  Curr Opin Chem Biol       Date:  2005-11-02       Impact factor: 8.822

Review 2.  Expanding the genetic code.

Authors:  Lei Wang; Jianming Xie; Peter G Schultz
Journal:  Annu Rev Biophys Biomol Struct       Date:  2006

3.  Efforts towards expansion of the genetic alphabet: pyridone and methyl pyridone nucleobases.

Authors:  Aaron M Leconte; Shigeo Matsuda; Gil Tae Hwang; Floyd E Romesberg
Journal:  Angew Chem Int Ed Engl       Date:  2006-06-26       Impact factor: 15.336

4.  Stability and polymerase recognition of pyridine nucleobase analogues: role of minor-groove H-bond acceptors.

Authors:  Yoonkyung Kim; Aaron M Leconte; Yoshiyuki Hari; Floyd E Romesberg
Journal:  Angew Chem Int Ed Engl       Date:  2006-11-27       Impact factor: 15.336

5.  Synthesis and properties of size-expanded DNAs: toward designed, functional genetic systems.

Authors:  Andrew T Krueger; Haige Lu; Alex H F Lee; Eric T Kool
Journal:  Acc Chem Res       Date:  2007-02       Impact factor: 22.384

6.  Optimization of unnatural base pair packing for polymerase recognition.

Authors:  Shigeo Matsuda; Allison A Henry; Floyd E Romesberg
Journal:  J Am Chem Soc       Date:  2006-05-17       Impact factor: 15.419

7.  New modular and efficient approach to 6-substituted pyridin-2-yl C-nucleosides.

Authors:  Milan Urban; Radek Pohl; Blanka Klepetarova; Michal Hocek
Journal:  J Org Chem       Date:  2006-09-15       Impact factor: 4.354

8.  Efforts to expand the genetic alphabet: identification of a replicable unnatural DNA self-pair.

Authors:  Allison A Henry; Anne Goldbech Olsen; Shigeo Matsuda; Chengzhi Yu; Bernhard H Geierstanger; Floyd E Romesberg
Journal:  J Am Chem Soc       Date:  2004-06-09       Impact factor: 15.419

Review 9.  Expanding nucleic acid function in vitro and in vivo.

Authors:  T Ashton Cropp; Jason W Chin
Journal:  Curr Opin Chem Biol       Date:  2006-10-19       Impact factor: 8.822

10.  Exploration of factors driving incorporation of unnatural dNTPS into DNA by Klenow fragment (DNA polymerase I) and DNA polymerase alpha.

Authors:  Kristi Kincaid; Jeff Beckman; Aleksandra Zivkovic; Randall L Halcomb; Joachim W Engels; Robert D Kuchta
Journal:  Nucleic Acids Res       Date:  2005-05-06       Impact factor: 16.971

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  7 in total

1.  Expanding the scope of replicable unnatural DNA: stepwise optimization of a predominantly hydrophobic base pair.

Authors:  Thomas Lavergne; Mélissa Degardin; Denis A Malyshev; Henry T Quach; Kirandeep Dhami; Phillip Ordoukhanian; Floyd E Romesberg
Journal:  J Am Chem Soc       Date:  2013-04-02       Impact factor: 15.419

2.  Evolving a polymerase for hydrophobic base analogues.

Authors:  David Loakes; José Gallego; Vitor B Pinheiro; Eric T Kool; Philipp Holliger
Journal:  J Am Chem Soc       Date:  2009-10-21       Impact factor: 15.419

Review 3.  The expanded genetic alphabet.

Authors:  Denis A Malyshev; Floyd E Romesberg
Journal:  Angew Chem Int Ed Engl       Date:  2015-08-25       Impact factor: 15.336

4.  Novel synthetic route to the C-nucleoside, 2-deoxy benzamide riboside.

Authors:  Rebecca R Midtkandal; Philip Redpath; Samuel A J Trammell; Simon J F Macdonald; Charles Brenner; Marie E Migaud
Journal:  Bioorg Med Chem Lett       Date:  2012-06-28       Impact factor: 2.823

5.  The effects of unnatural base pairs and mispairs on DNA duplex stability and solvation.

Authors:  Gil Tae Hwang; Yoshiyuki Hari; Floyd E Romesberg
Journal:  Nucleic Acids Res       Date:  2009-06-10       Impact factor: 16.971

Review 6.  Synthetic constructs in/for the environment: managing the interplay between natural and engineered Biology.

Authors:  Markus Schmidt; Víctor de Lorenzo
Journal:  FEBS Lett       Date:  2012-02-23       Impact factor: 4.124

7.  Expansion of the Genetic Alphabet: A Chemist's Approach to Synthetic Biology.

Authors:  Aaron W Feldman; Floyd E Romesberg
Journal:  Acc Chem Res       Date:  2017-12-02       Impact factor: 22.384

  7 in total

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