Literature DB >> 19011015

Localization of a gene for keratoconus to a 5.6-Mb interval on 13q32.

Marzena Gajecka1, Uppala Radhakrishna, Daniel Winters, Swapan K Nath, Malgorzata Rydzanicz, Uppala Ratnamala, Kimberly Ewing, Andrea Molinari, Jose A Pitarque, Kwanghyuk Lee, Suzanne M Leal, Bassem A Bejjani.   

Abstract

PURPOSE: Keratoconus (KTCN) is a noninflammatory thinning and anterior protrusion of the cornea that results in steepening and distortion of the cornea, altered refractive powers, and reduced visual acuity. Several loci responsible for a familial form of KTCN have been mapped, however; no mutations in any genes have been identified for any of these loci. There is also evidence that VSX1 and SOD1 may be involved in the etiology of KTCN. The purpose of this study was to verify the available data and to identify a new keratoconus susceptibility locus.
METHODS: KTCN without other ocular or systemic features was diagnosed in 18 families. VSX1 and SOD1 sequencing was performed on affected individuals and control subjects. Genomewide linkage analysis was then performed in all families using polymorphic microsatellite markers with an average spacing of 5 cM. Next, single-nucleotide polymorphism (SNP) arrays, fluorescence in situ hybridization (FISH) analysis, and a comparative genomic hybridization array were used in one family to assess a candidate region on 13q32.
RESULTS: All previously reported KTCN loci were excluded. VSX1 and SOD1 were sequenced, and no potentially functional variants were found. One KTCN family yielded a maximum multipoint parametric LOD score of 4.1 and multipoint nonparametric linkage (NPL) LOD score of 3.2. Multipoint linkage and haplotype analysis narrowed the locus to a 5.6-Mb region between the SNPs rs9516572 and rs3825523 on 13q32.
CONCLUSIONS: The results exclude VSX1 and SOD1 as potential disease-causing genes in these families and localize a novel gene for keratoconus to a 5.6-Mb interval on 13q32.

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Year:  2008        PMID: 19011015      PMCID: PMC4547351          DOI: 10.1167/iovs.08-2173

Source DB:  PubMed          Journal:  Invest Ophthalmol Vis Sci        ISSN: 0146-0404            Impact factor:   4.799


  35 in total

1.  Allegro, a new computer program for multipoint linkage analysis.

Authors:  D F Gudbjartsson; K Jonasson; M L Frigge; A Kong
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

2.  Keratoconus associated with chromosome 13 ring abnormality.

Authors:  C J Heaven; F Lalloo; E Mchale
Journal:  Br J Ophthalmol       Date:  2000-09       Impact factor: 4.638

Review 3.  The genetics of keratoconus.

Authors:  M Edwards; C N McGhee; S Dean
Journal:  Clin Exp Ophthalmol       Date:  2001-12       Impact factor: 4.207

4.  GRR: graphical representation of relationship errors.

Authors:  G R Abecasis; S S Cherny; W O Cookson; L R Cardon
Journal:  Bioinformatics       Date:  2001-08       Impact factor: 6.937

5.  Keratoconus and the Ehlers-Danlos syndrome: a new aspect of keratoconus.

Authors:  I Robertson
Journal:  Med J Aust       Date:  1975-05-03       Impact factor: 7.738

6.  Familial keratoconus with cataract: linkage to the long arm of chromosome 15 and exclusion of candidate genes.

Authors:  Anne E Hughes; Durga P Dash; A Jonathan Jackson; David G Frazer; Giuliana Silvestri
Journal:  Invest Ophthalmol Vis Sci       Date:  2003-12       Impact factor: 4.799

7.  A locus for autosomal dominant keratoconus: linkage to 16q22.3-q23.1 in Finnish families.

Authors:  Henna Tyynismaa; Pertti Sistonen; Sari Tuupanen; Timo Tervo; Anja Dammert; Terho Latvala; Tiina Alitalo
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-10       Impact factor: 4.799

8.  Descent graphs in pedigree analysis: applications to haplotyping, location scores, and marker-sharing statistics.

Authors:  E Sobel; K Lange
Journal:  Am J Hum Genet       Date:  1996-06       Impact factor: 11.025

9.  Computer programs for multilocus haplotyping of general pedigrees.

Authors:  D E Weeks; E Sobel; J R O'Connell; K Lange
Journal:  Am J Hum Genet       Date:  1995-06       Impact factor: 11.025

10.  Genomic microarray analysis reveals distinct locations for the CENP-A binding domains in three human chromosome 13q32 neocentromeres.

Authors:  Alicia Alonso; Radma Mahmood; Shulan Li; Fanny Cheung; Kinya Yoda; Peter E Warburton
Journal:  Hum Mol Genet       Date:  2003-08-19       Impact factor: 6.150

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  40 in total

1.  Association of polymorphisms in the hepatocyte growth factor gene promoter with keratoconus.

Authors:  Kathryn P Burdon; Stuart Macgregor; Yelena Bykhovskaya; Sharhbanou Javadiyan; Xiaohui Li; Kate J Laurie; Dorota Muszynska; Richard Lindsay; Judith Lechner; Talin Haritunians; Anjali K Henders; Durga Dash; David Siscovick; Seema Anand; Anthony Aldave; Douglas J Coster; Loretta Szczotka-Flynn; Richard A Mills; Sudha K Iyengar; Kent D Taylor; Tony Phillips; Grant W Montgomery; Jerome I Rotter; Alex W Hewitt; Shiwani Sharma; Yaron S Rabinowitz; Colin Willoughby; Jamie E Craig
Journal:  Invest Ophthalmol Vis Sci       Date:  2011-10-31       Impact factor: 4.799

Review 2.  Keratoconus: an inflammatory disorder?

Authors:  V Galvis; T Sherwin; A Tello; J Merayo; R Barrera; A Acera
Journal:  Eye (Lond)       Date:  2015-05-01       Impact factor: 3.775

3.  Collagen synthesis disruption and downregulation of core elements of TGF-β, Hippo, and Wnt pathways in keratoconus corneas.

Authors:  Michal Kabza; Justyna A Karolak; Malgorzata Rydzanicz; Michał W Szcześniak; Dorota M Nowak; Barbara Ginter-Matuszewska; Piotr Polakowski; Rafal Ploski; Jacek P Szaflik; Marzena Gajecka
Journal:  Eur J Hum Genet       Date:  2017-02-01       Impact factor: 4.246

4.  Classification of posterior polymorphous corneal dystrophy as a corneal ectatic disorder following confirmation of associated significant corneal steepening.

Authors:  Anthony J Aldave; Lydia B Ann; Ricardo F Frausto; Catherine K Nguyen; Fei Yu; Irving M Raber
Journal:  JAMA Ophthalmol       Date:  2013-12       Impact factor: 7.389

5.  Quantitative trait loci associated with murine central corneal thickness.

Authors:  Geoffrey D Lively; Demelza Koehn; Adam Hedberg-Buenz; Kai Wang; Michael G Anderson
Journal:  Physiol Genomics       Date:  2010-04-27       Impact factor: 3.107

6.  Novel mutation and three other sequence variants segregating with phenotype at keratoconus 13q32 susceptibility locus.

Authors:  Marta Czugala; Justyna A Karolak; Dorota M Nowak; Piotr Polakowski; Jose Pitarque; Andrea Molinari; Malgorzata Rydzanicz; Bassem A Bejjani; Beatrice Y J T Yue; Jacek P Szaflik; Marzena Gajecka
Journal:  Eur J Hum Genet       Date:  2011-11-02       Impact factor: 4.246

7.  The Genetics of Keratoconus: A Review.

Authors:  Joshua Wheeler; Michael A Hauser; Natalie A Afshari; R Rand Allingham; Yutao Liu
Journal:  Reprod Syst Sex Disord       Date:  2012-06-03

8.  Deletion of Chromosome 13 due to Different Rearrangements and Impact on Phenotype.

Authors:  Fernanda T Bellucco; Hélio Rodrigues de Oliveira-Júnior; Roberta Santos Guilherme; Silvia Bragagnolo; Ana B Alvarez Perez; Vera Ayres Meloni; Maria I Melaragno
Journal:  Mol Syndromol       Date:  2019-03-06

9.  VSX1 gene analysis in keratoconus.

Authors:  Mukesh Tanwar; Manoj Kumar; Bhagabat Nayak; Dhananjay Pathak; Namrata Sharma; Jeewan S Titiyal; Rima Dada
Journal:  Mol Vis       Date:  2010-11-16       Impact factor: 2.367

10.  Sequence variants in COL4A1 and COL4A2 genes in Ecuadorian families with keratoconus.

Authors:  Justyna A Karolak; Karolina Kulinska; Dorota M Nowak; Jose A Pitarque; Andrea Molinari; Malgorzata Rydzanicz; Bassem A Bejjani; Marzena Gajecka
Journal:  Mol Vis       Date:  2011-03-30       Impact factor: 2.367

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