Literature DB >> 19010556

Understanding human metabolic physiology: a genome-to-systems approach.

Monica L Mo1, Bernhard Ø Palsson.   

Abstract

The intricate nature of human physiology renders its study a difficult undertaking, and a systems biology approach is necessary to understand the complex interactions involved. Network reconstruction is a key step in systems biology and represents a common denominator because all systems biology research on a target organism relies on such a representation. With the recent development of genome-scale human metabolic networks, metabolic systems analysis is now possible and has initiated a shift towards human systems biology. Here, we review the important aspects of reconstructing a bottom-up human metabolic network, the network's role in modeling human physiology and the necessity for a community-based consensus reconstruction of human metabolism to be established.

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Year:  2008        PMID: 19010556     DOI: 10.1016/j.tibtech.2008.09.007

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  16 in total

Review 1.  In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling.

Authors:  Radhakrishnan Mahadevan; Bernhard Ø Palsson; Derek R Lovley
Journal:  Nat Rev Microbiol       Date:  2010-12-06       Impact factor: 60.633

Review 2.  Interactome networks and human disease.

Authors:  Marc Vidal; Michael E Cusick; Albert-László Barabási
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

Review 3.  Bioinformatics and systems biology.

Authors:  Prahlad T Ram; John Mendelsohn; Gordon B Mills
Journal:  Mol Oncol       Date:  2012-02-17       Impact factor: 6.603

4.  Reconstruction annotation jamborees: a community approach to systems biology.

Authors:  Ines Thiele; Bernhard Ø Palsson
Journal:  Mol Syst Biol       Date:  2010-04-13       Impact factor: 11.429

5.  Integration of metabolic databases for the reconstruction of genome-scale metabolic networks.

Authors:  Karin Radrich; Yoshimasa Tsuruoka; Paul Dobson; Albert Gevorgyan; Neil Swainston; Gino Baart; Jean-Marc Schwartz
Journal:  BMC Syst Biol       Date:  2010-08-16

Review 6.  Synthetic biology: putting synthesis into biology.

Authors:  Jing Liang; Yunzi Luo; Huimin Zhao
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2011 Jan-Feb

7.  Critical assessment of human metabolic pathway databases: a stepping stone for future integration.

Authors:  Miranda D Stobbe; Sander M Houten; Gerbert A Jansen; Antoine H C van Kampen; Perry D Moerland
Journal:  BMC Syst Biol       Date:  2011-10-14

8.  Dissection of a complex transcriptional response using genome-wide transcriptional modelling.

Authors:  Martino Barenco; Daniel Brewer; Efterpi Papouli; Daniela Tomescu; Robin Callard; Jaroslav Stark; Michael Hubank
Journal:  Mol Syst Biol       Date:  2009-11-17       Impact factor: 11.429

9.  Evidence for the adaptation of protein pH-dependence to subcellular pH.

Authors:  Pedro Chan; Jim Warwicker
Journal:  BMC Biol       Date:  2009-10-22       Impact factor: 7.431

10.  To supplement or not to supplement: a metabolic network framework for human nutritional supplements.

Authors:  Christopher D Nogiec; Simon Kasif
Journal:  PLoS One       Date:  2013-08-05       Impact factor: 3.240

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