Literature DB >> 19005562

An X-ray microsource based system for crystal screening and beamline development during synchrotron shutdown periods.

Mitchell D Miller1, Ashley M Deacon.   

Abstract

Crystallographic end-stations require a significant investment in state-of-the-art equipment, as well as a significant effort in software development. The equipment often sits idle during annual maintenance shutdowns. In order to utilize the existing hardware and software during these shutdowns, we installed a sealed-tube microsource X-ray generator in the beamline 9-2 hutch at Stanford Synchrotron Radiation Laboratory. A multi-layer optic provides good flux and spectral purity. The small physical size of the source, the long optic to focus distance (635 mm) and the short source to optic distance (65 mm) allowed the use of existing beamline components, without any significant modification. The system replaces a short section of beam pipe upstream of the beam conditioning slits and shutter. The system can be installed and removed from the beamline in less than 1 day.The Joint Center for Structural Genomics (JCSG) and SSRL Structural Molecular Biology group developed the Stanford Automated Mounting (SAM) system and installed it on beamlines at SSRL. The JCSG relies on this system to test crystals for diffraction. The installation of the X-ray microsource in beamline 9-2 allowed crystal screening to continue during SSRL shutdowns. Using a standard screening protocol of two 10 minute exposures, separated by a 90° phi rotation, the system was capable of screening up to 400 crystals per week and was left to run unattended for up to 4 days. Over 8200 crystals were screened during the last four SSRL shutdown periods.An X-ray generator can also be useful for ongoing beamline development. Shutdown periods provide easier access to the experimental hardware, however, some tests require beam. The X-ray microsource offers the ability to conduct these tests during periods when users are not scheduled.

Year:  2007        PMID: 19005562      PMCID: PMC2329580          DOI: 10.1016/j.nima.2007.08.136

Source DB:  PubMed          Journal:  Nucl Instrum Methods Phys Res A        ISSN: 0168-9002            Impact factor:   1.455


  2 in total

1.  Blu-Ice and the Distributed Control System: software for data acquisition and instrument control at macromolecular crystallography beamlines.

Authors:  Timothy M McPhillips; Scott E McPhillips; Hsiu-Ju Chiu; Aina E Cohen; Ashley M Deacon; Paul J Ellis; Elspeth Garman; Ana Gonzalez; Nicholas K Sauter; R Paul Phizackerley; S Michael Soltis; Peter Kuhn
Journal:  J Synchrotron Radiat       Date:  2002-11-01       Impact factor: 2.616

2.  Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline.

Authors:  Scott A Lesley; Peter Kuhn; Adam Godzik; Ashley M Deacon; Irimpan Mathews; Andreas Kreusch; Glen Spraggon; Heath E Klock; Daniel McMullan; Tanya Shin; Juli Vincent; Alyssa Robb; Linda S Brinen; Mitchell D Miller; Timothy M McPhillips; Mark A Miller; Daniel Scheibe; Jaume M Canaves; Chittibabu Guda; Lukasz Jaroszewski; Thomas L Selby; Marc-Andre Elsliger; John Wooley; Susan S Taylor; Keith O Hodgson; Ian A Wilson; Peter G Schultz; Raymond C Stevens
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-22       Impact factor: 11.205

  2 in total
  6 in total

1.  Structure and function of a novel LD-carboxypeptidase a involved in peptidoglycan recycling.

Authors:  Debanu Das; Mireille Hervé; Marc-André Elsliger; Rameshwar U Kadam; Joanna C Grant; Hsiu-Ju Chiu; Mark W Knuth; Heath E Klock; Mitchell D Miller; Adam Godzik; Scott A Lesley; Ashley M Deacon; Dominique Mengin-Lecreulx; Ian A Wilson
Journal:  J Bacteriol       Date:  2013-10-11       Impact factor: 3.490

2.  Structure of a putative NTP pyrophosphohydrolase: YP_001813558.1 from Exiguobacterium sibiricum 255-15.

Authors:  Gye Won Han; Marc André Elsliger; Todd O Yeates; Qingping Xu; Alexey G Murzin; S Sri Krishna; Lukasz Jaroszewski; Polat Abdubek; Tamara Astakhova; Herbert L Axelrod; Dennis Carlton; Connie Chen; Hsiu Ju Chiu; Thomas Clayton; Debanu Das; Marc C Deller; Lian Duan; Dustin Ernst; Julie Feuerhelm; Joanna C Grant; Anna Grzechnik; Kevin K Jin; Hope A Johnson; Heath E Klock; Mark W Knuth; Piotr Kozbial; Abhinav Kumar; Winnie W Lam; David Marciano; Daniel McMullan; Mitchell D Miller; Andrew T Morse; Edward Nigoghossian; Linda Okach; Ron Reyes; Christopher L Rife; Natasha Sefcovic; Henry J Tien; Christine B Trame; Henry van den Bedem; Dana Weekes; Keith O Hodgson; John Wooley; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-08-04

3.  Structures of the first representatives of Pfam family PF06938 (DUF1285) reveal a new fold with repeated structural motifs and possible involvement in signal transduction.

Authors:  Gye Won Han; Constantina Bakolitsa; Mitchell D Miller; Abhinav Kumar; Dennis Carlton; Rafael J Najmanovich; Polat Abdubek; Tamara Astakhova; Herbert L Axelrod; Connie Chen; Hsiu Ju Chiu; Thomas Clayton; Debanu Das; Marc C Deller; Lian Duan; Dustin Ernst; Julie Feuerhelm; Joanna C Grant; Anna Grzechnik; Lukasz Jaroszewski; Kevin K Jin; Hope A Johnson; Heath E Klock; Mark W Knuth; Piotr Kozbial; S Sri Krishna; David Marciano; Daniel McMullan; Andrew T Morse; Edward Nigoghossian; Linda Okach; Ron Reyes; Christopher L Rife; Natasha Sefcovic; Henry J Tien; Christine B Trame; Henry van den Bedem; Dana Weekes; Qingping Xu; Keith O Hodgson; John Wooley; Marc André Elsliger; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-05

4.  Crystal structure of a novel archaeal AAA+ ATPase SSO1545 from Sulfolobus solfataricus.

Authors:  Qingping Xu; Christopher L Rife; Dennis Carlton; Mitchell D Miller; S Sri Krishna; Marc-André Elsliger; Polat Abdubek; Tamara Astakhova; Hsiu-Ju Chiu; Thomas Clayton; Lian Duan; Julie Feuerhelm; Slawomir K Grzechnik; Joanna Hale; Gye Won Han; Lukasz Jaroszewski; Kevin K Jin; Heath E Klock; Mark W Knuth; Abhinav Kumar; Daniel McMullan; Andrew T Morse; Edward Nigoghossian; Linda Okach; Silvya Oommachen; Jessica Paulsen; Ron Reyes; Henry van den Bedem; Keith O Hodgson; John Wooley; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson
Journal:  Proteins       Date:  2009-03

Review 5.  The impact of structural genomics: the first quindecennial.

Authors:  Marek Grabowski; Ewa Niedzialkowska; Matthew D Zimmerman; Wladek Minor
Journal:  J Struct Funct Genomics       Date:  2016-03-02

6.  Molecular characterization of novel pyridoxal-5'-phosphate-dependent enzymes from the human microbiome.

Authors:  Nicholas M Fleischman; Debanu Das; Abhinav Kumar; Qingping Xu; Hsiu-Ju Chiu; Lukasz Jaroszewski; Mark W Knuth; Heath E Klock; Mitchell D Miller; Marc-André Elsliger; Adam Godzik; Scott A Lesley; Ashley M Deacon; Ian A Wilson; Michael D Toney
Journal:  Protein Sci       Date:  2014-06-14       Impact factor: 6.725

  6 in total

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